BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0106900 Os06g0106900|AK067326
(215 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25670.1 | chr4:13085431-13085997 REVERSE LENGTH=189 80 7e-16
AT4G25690.1 | chr4:13090421-13090996 REVERSE LENGTH=192 80 7e-16
AT5G52550.1 | chr5:21327914-21328996 REVERSE LENGTH=361 73 1e-13
>AT4G25670.1 | chr4:13085431-13085997 REVERSE LENGTH=189
Length = 188
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 50/73 (68%)
Query: 23 DELDRQKQAEKKRRRLEKALANSAAIISELXXXXXXXXXXXXXLDDEGAAIAEAVALHVL 82
DE DR KQAEKK+RRLEKALA SAAI +EL LD+EGAAIAEAVALHVL
Sbjct: 23 DEFDRIKQAEKKKRRLEKALATSAAIRAELEKKKQKRLEEQQRLDEEGAAIAEAVALHVL 82
Query: 83 IDEDSEEPCHLML 95
+ EDS++ +
Sbjct: 83 LGEDSDDSSRVKF 95
>AT4G25690.1 | chr4:13090421-13090996 REVERSE LENGTH=192
Length = 191
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 50/71 (70%)
Query: 23 DELDRQKQAEKKRRRLEKALANSAAIISELXXXXXXXXXXXXXLDDEGAAIAEAVALHVL 82
DE DR KQAEKK+RRLEKALA SAAI +EL LD+EGAAIAEAVALHVL
Sbjct: 23 DEFDRIKQAEKKKRRLEKALATSAAIRAELEKKKQKRLEEQQRLDEEGAAIAEAVALHVL 82
Query: 83 IDEDSEEPCHL 93
+ EDS++ +
Sbjct: 83 LGEDSDDSSRV 93
>AT5G52550.1 | chr5:21327914-21328996 REVERSE LENGTH=361
Length = 360
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 23 DELDRQKQAEKKRRRLEKALANSAAIISELXXXXXXXXXXXXXLDDEGAAIAEAVALHVL 82
+EL+R KQAE+K+RR+EK++A SAAI +EL LD+EGAAIAEAVALHVL
Sbjct: 188 EELERIKQAERKKRRIEKSIATSAAIRAELEKKKLRKLEEQRRLDEEGAAIAEAVALHVL 247
Query: 83 IDEDSEEPCHLMLN 96
+ ED ++ LN
Sbjct: 248 LGEDCDDSYRNTLN 261
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 23 DELDRQKQAEKKRRRLEKALANSAAIISELXXXXXXXXXXXXXLDDEGAAIAE 75
DEL+R KQAE K+ RLEK++A SAAI++EL L +EGAAIAE
Sbjct: 85 DELERIKQAENKKNRLEKSIATSAAIMAELEKKKLRKLEEQKRLAEEGAAIAE 137
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,811,621
Number of extensions: 147505
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 4
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)