BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0597100 Os05g0597100|AK072845
         (297 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0597100  Similar to Nucleolar histone deacetylase HD2-p39    346   1e-95
AK063535                                                          315   3e-86
Os01g0909150                                                      104   6e-23
Os01g0909500  Zinc finger, C2H2-type domain containing protein     72   5e-13

>Os05g0597100 Similar to Nucleolar histone deacetylase HD2-p39
          Length = 297

 Score =  346 bits (887), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/297 (63%), Positives = 188/297 (63%)

Query: 1   MEFWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSAD 60
           MEFWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSAD
Sbjct: 1   MEFWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSAD 60

Query: 61  KFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQPAXXXXXXXXXXXXXXXXXXXKIIP 120
           KFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQPA                   KIIP
Sbjct: 61  KFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQPAEEDEMDFDSEEVEDEEEEEKIIP 120

Query: 121 APRAXXXXXXXXXXXXXXXXTDXXXXXXXXXVNXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           APRA                TD         VN                           
Sbjct: 121 APRANGKVEGKENEQKKQGKTDSSASKSKAAVNDDDDDDDSDEDDSEDEDLSPEDDDDDS 180

Query: 181 XXXXXXXXXXXXXXXXXTPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVH 240
                            TPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVH
Sbjct: 181 SEDDSSEDDEDESDEEDTPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVH 240

Query: 241 VATPHPAKQASKTPVNDXXXXXXXXXXXXXXXXXXXXXTFNSEMALQSHSKAKHPAK 297
           VATPHPAKQASKTPVND                     TFNSEMALQSHSKAKHPAK
Sbjct: 241 VATPHPAKQASKTPVNDKSKEKSPKSGGGSISCKSCSKTFNSEMALQSHSKAKHPAK 297



>AK063535 
          Length = 282

 Score =  315 bits (806), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/257 (65%), Positives = 169/257 (65%)

Query: 1   MEFWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSAD 60
           MEFWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSAD
Sbjct: 1   MEFWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSAD 60

Query: 61  KFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQPAXXXXXXXXXXXXXXXXXXXKIIP 120
           KFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQPA                   KIIP
Sbjct: 61  KFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQPAEEDEMDFDSEEVEDEEEEEKIIP 120

Query: 121 APRAXXXXXXXXXXXXXXXXTDXXXXXXXXXVNXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           APRA                TD         VN                           
Sbjct: 121 APRANGKVEGKENEQKKQGKTDSSASKSKAAVNDDDDDDDSDEDDSEDEDLSPEDDDDDS 180

Query: 181 XXXXXXXXXXXXXXXXXTPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVH 240
                            TPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVH
Sbjct: 181 SEDDSSEDDEDESDEEDTPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVH 240

Query: 241 VATPHPAKQASKTPVND 257
           VATPHPAKQASKTPVND
Sbjct: 241 VATPHPAKQASKTPVND 257



>Os01g0909150 
          Length = 315

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%), Gaps = 1/89 (1%)

Query: 1  MEFWGLEVKPGQTVKCEPEDERFLHLSQAALGESKK-GSDNAVMYVKTDDQKLVIGTLSA 59
          MEFWG+EVKPG+ V    +DE  +H+SQ ALGE+KK GS+N V+ VK D +K VIG LSA
Sbjct: 1  MEFWGIEVKPGKAVSFNVDDECVIHISQVALGETKKAGSENVVVSVKVDGKKTVIGNLSA 60

Query: 60 DKFPQIQFDLVFDKEFELSHTSKTASVFF 88
             PQ   DL    +FELSH+SKT SVF 
Sbjct: 61 KNHPQFMCDLFIGNDFELSHSSKTTSVFL 89



>Os01g0909500 Zinc finger, C2H2-type domain containing protein
          Length = 320

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 1  MEFWGLEVKPG--QTVKCEPEDERFLHLSQAALGESKKGSDNAV-MYVKTDDQKLVIGTL 57
          ++FWG+ ++P   + + C PED    HL+  AL E+    D+ V ++V+ +D+K  IGTL
Sbjct: 3  VDFWGVVIEPCNKKEIFC-PED-TLYHLTSVALDEAYGLKDSNVKVFVEVNDEKFAIGTL 60

Query: 58 SADKFPQIQFDLVFDKEFELSHTSKTASVFFSGYKV 93
          S+ + P I+ D  F K F+L HTS  + V F GY+V
Sbjct: 61 SSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQV 96



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,108,705
Number of extensions: 184892
Number of successful extensions: 329
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 6
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)