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Os01g0909500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.03 (0.0204) R2 : 0.898
β1 : -- (--) R2dD : -- R2D : --
β2 : 7.3 (0.169) R2dC : 4.25 R2C : -0.707
β3 : -3.87 (0.146) R2dE : 1.6 R2E : -3.35
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.154 (0.0427) R2dN8 : 0.00349 R2N8 : -0.0193
σ : 0.38
deviance : 66.4
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C
peak time of C : 17.7
E
wheather : temperature
threshold : 16.38
memory length : 327
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.3
open length of G : 11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.75 0.366 9.02 -0.382 6.4 -3.08 -1.62 2.21 0.0948 17.7 15.6 307 10.8 10.7
61.98 0.367 9.05 -0.423 6.95 -3.57 0.688 -- 0.0752 17.8 15.32 333 10.3 11
64.25 0.373 9.05 -0.425 6.38 -3.03 -- 1.68 0.0642 17.7 15.3 300 10.8 10.7
63.12 0.37 9.04 -0.321 7.1 -3.71 -- -- 0.097 17.7 15.82 329 10.3 10.9
107.24 0.482 8.88 -0.506 -- -2.81 -- -1.49 0.0482 -- -45.94 1090 12.8 13.7
108.17 0.488 8.96 -0.529 3.16 -- 0.265 -- -0.0172 16.6 -- -- -- --
108.36 0.487 8.96 -0.527 3.16 -- -- -- -0.0158 16.6 -- -- -- --
99.71 0.465 8.91 -0.502 -- -2.84 -- -- 0.0339 -- -44.67 1055 12.9 13.9
66.4 0.38 9.03 -- 7.3 -3.87 -- -- 0.154 17.7 16.38 327 10.3 11
642.15 1.18 8.94 -0.649 -- -- -- -- -0.0989 -- -- -- -- --
115.68 0.503 8.95 -- 3.17 -- -- -- 0.0429 16.6 -- -- -- --
106.29 0.48 8.89 -- -- -2.86 -- -- 0.0863 -- -44.09 1047 12.9 13.9
653.27 1.19 8.92 -- -- -- -- -- -0.0269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.01 temperature 15.0 270 > th dose independent rect. 11 11
2 66.74 temperature 10.0 270 > th dose dependent rect. 3 3
3 67.95 precipitation 0.1 270 < th dose independent rect. 3 3
4 67.95 precipitation 0.1 270 < th dose dependent rect. 3 3
7 68.21 radiation 10.0 270 < th dose independent rect. 3 3
8 68.60 wind 9.0 270 < th dose dependent rect. 3 3
9 68.94 atmosphere 1010.0 270 < th dose independent rect. 3 3
11 69.25 radiation 20.0 270 < th dose dependent rect. 3 3
13 69.26 wind 7.0 270 < th dose independent rect. 3 3
16 69.31 temperature 10.0 270 > th dose independent rect. 3 3
18 69.31 temperature 30.0 270 < th dose independent rect. 3 3
19 69.31 humidity 50.0 270 > th dose independent rect. 3 3
22 69.31 atmosphere 995.0 270 > th dose independent rect. 3 3
27 69.31 temperature 10.0 270 > th dose independent rect. 6 21
29 69.40 humidity 50.0 270 > th dose dependent rect. 3 3
30 69.43 wind 9.0 270 < th dose independent rect. 6 21
34 69.92 temperature 15.0 270 > th dose independent rect. 2 13
38 70.38 temperature 10.0 270 > th dose independent rect. 22 13
39 70.38 atmosphere 995.0 270 > th dose independent rect. 22 13
42 70.85 humidity 50.0 270 > th dose independent rect. 22 13
45 71.09 temperature 10.0 270 > th dose dependent rect. 2 5
46 71.15 wind 9.0 270 < th dose independent rect. 22 13
47 71.18 temperature 15.0 270 > th dose independent rect. 10 21
48 71.28 radiation 20.0 90 < th dose independent rect. 4 5
51 71.37 temperature 15.0 270 > th dose independent rect. 5 23
53 71.44 atmosphere 1015.0 270 < th dose dependent rect. 3 3
57 71.58 precipitation 0.1 270 < th dose independent rect. 11 11
58 71.58 precipitation 0.1 270 < th dose dependent rect. 11 11
59 71.59 temperature 30.0 270 < th dose dependent rect. 7 3
65 71.81 atmosphere 1010.0 270 < th dose independent rect. 11 10
68 71.89 precipitation 0.1 270 < th dose independent rect. 2 13
69 71.89 precipitation 0.1 270 < th dose dependent rect. 2 13
71 72.07 precipitation 0.1 270 < th dose independent rect. 6 21
72 72.07 precipitation 0.1 270 < th dose dependent rect. 6 21
75 72.23 temperature 15.0 720 > th dose independent rect. 19 20
78 72.34 temperature 15.0 720 > th dose independent rect. 10 5
79 72.35 wind 9.0 270 < th dose independent rect. 11 11
86 72.58 wind 7.0 270 < th dose independent rect. 16 10
87 72.59 temperature 15.0 270 > th dose independent rect. 12 18
89 72.60 wind 1.0 270 > th dose independent rect. 11 11
106 72.66 precipitation 0.1 270 < th dose independent rect. 22 13
109 72.66 precipitation 0.1 270 < th dose dependent rect. 22 13
118 72.79 radiation 40.0 90 < th dose dependent rect. 4 5
131 72.95 wind 9.0 270 < th dose independent rect. 2 13
138 73.04 temperature 30.0 270 < th dose dependent rect. 6 5
183 73.28 temperature 10.0 90 > th dose independent rect. 8 20
193 73.43 temperature 15.0 720 > th dose independent rect. 19 11
199 73.48 temperature 15.0 10 > th dose independent rect. 14 19
203 73.55 temperature 15.0 720 > th dose independent rect. 18 13
228 73.72 temperature 10.0 270 > th dose independent rect. 15 11
229 73.72 radiation 40.0 270 < th dose independent rect. 15 11
231 73.72 atmosphere 1015.0 270 < th dose independent rect. 2 13
293 74.46 wind 7.0 10 < th dose dependent rect. 5 4
294 74.47 atmosphere 995.0 270 > th dose independent rect. 2 13
351 74.76 radiation 40.0 270 < th dose dependent rect. 15 15
370 74.92 precipitation 0.1 270 < th dose independent rect. 16 10
372 74.92 precipitation 0.1 270 < th dose dependent rect. 16 10
428 75.21 atmosphere 995.0 90 > th dose independent rect. 8 20
430 75.23 radiation 40.0 10 < th dose independent rect. 14 19
443 75.31 atmosphere 995.0 270 > th dose independent rect. 6 21
445 75.32 precipitation 0.1 270 < th dose independent rect. 10 22
447 75.32 precipitation 0.1 270 < th dose dependent rect. 10 22
456 75.39 temperature 10.0 270 > th dose independent rect. 9 1
457 75.39 atmosphere 995.0 270 > th dose independent rect. 9 1
458 75.39 atmosphere 1015.0 270 < th dose independent rect. 9 1
471 75.48 humidity 50.0 270 > th dose independent rect. 9 1
476 75.52 atmosphere 1015.0 270 < th dose independent rect. 22 13
511 75.71 precipitation 0.1 270 < th dose independent rect. 11 20
513 75.71 precipitation 0.1 270 < th dose dependent rect. 11 20
518 75.74 radiation 1.0 30 < th dose dependent sin 11 NA
522 75.79 precipitation 0.1 270 < th dose independent rect. 9 1
523 75.79 precipitation 0.1 270 < th dose dependent rect. 9 1
528 75.81 wind 9.0 270 < th dose independent rect. 8 2
531 75.85 temperature 10.0 270 > th dose independent rect. 7 4
532 75.85 atmosphere 995.0 270 > th dose independent rect. 7 4
533 75.85 atmosphere 1015.0 270 < th dose independent rect. 7 4
549 75.93 radiation 1.0 30 < th dose independent sin 11 NA
550 75.94 precipitation 0.1 270 < th dose independent rect. 12 18
551 75.94 precipitation 0.1 270 < th dose dependent rect. 12 18
553 75.98 humidity 50.0 270 > th dose independent rect. 7 4
558 76.03 wind 9.0 270 < th dose independent rect. 11 20
561 76.04 temperature 10.0 270 > th dose independent rect. 6 6
562 76.04 atmosphere 995.0 270 > th dose independent rect. 6 6
563 76.04 atmosphere 1015.0 270 < th dose independent rect. 6 6
567 76.06 wind 9.0 270 < th dose independent rect. 10 22
570 76.09 precipitation 0.1 270 < th dose independent rect. 7 4
573 76.09 precipitation 0.1 270 < th dose dependent rect. 7 4
577 76.17 wind 9.0 270 < th dose independent rect. 7 4
589 76.23 precipitation 0.1 10 < th dose independent rect. 14 19
590 76.23 precipitation 0.1 10 < th dose dependent rect. 14 19
591 76.24 wind 1.0 270 > th dose independent rect. 8 2
593 76.24 precipitation 0.1 270 < th dose independent rect. 6 6
594 76.24 precipitation 0.1 270 < th dose dependent rect. 6 6
623 76.42 wind 9.0 270 < th dose independent rect. 12 18
636 76.45 radiation 1.0 10 > th dose independent rect. 5 4
655 76.48 temperature 15.0 720 > th dose independent rect. 19 3
661 76.49 atmosphere 995.0 270 > th dose independent rect. 16 10
665 76.51 humidity 50.0 270 > th dose independent rect. 6 6
701 76.62 radiation 10.0 270 < th dose dependent rect. 2 11
716 76.68 wind 9.0 270 < th dose independent rect. 6 6
728 76.71 wind 9.0 10 < th dose independent rect. 14 19
740 76.77 atmosphere 995.0 270 > th dose independent rect. 11 10
752 76.81 radiation 1.0 10 > th dose independent rect. 9 5
774 76.88 wind 1.0 270 > th dose independent rect. 7 4
788 76.89 humidity 50.0 270 > th dose independent rect. 13 17
838 77.04 temperature 10.0 10 > th dose independent rect. 9 5
840 77.04 atmosphere 995.0 10 > th dose independent rect. 9 5
841 77.04 atmosphere 1015.0 10 < th dose independent rect. 9 5
842 77.04 precipitation 0.1 10 < th dose independent rect. 9 5
844 77.04 precipitation 0.1 10 < th dose dependent rect. 9 5
853 77.08 radiation 1.0 90 > th dose independent rect. 8 5
858 77.09 wind 1.0 270 > th dose independent rect. 6 6
883 77.18 humidity 50.0 270 > th dose independent rect. 12 19
918 77.34 temperature 30.0 270 < th dose independent rect. 21 14
947 77.45 radiation 40.0 270 < th dose dependent rect. 16 10
953 77.48 radiation 20.0 270 < th dose independent rect. 15 15
974 77.66 atmosphere 995.0 270 > th dose independent rect. 12 18
989 77.75 atmosphere 995.0 270 > th dose independent rect. 11 20