BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0909500 Os01g0909500|AK069641
         (320 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22650.1  | chr5:7534120-7536054 FORWARD LENGTH=307             77   1e-14
AT5G03740.1  | chr5:981994-983961 FORWARD LENGTH=295               64   8e-11
AT3G44750.1  | chr3:16298045-16299585 FORWARD LENGTH=246           60   2e-09
AT2G27840.1  | chr2:11862085-11863707 FORWARD LENGTH=204           49   3e-06

>AT5G22650.1 | chr5:7534120-7536054 FORWARD LENGTH=307
          Length = 306

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 3   VDFWGVVIEPCNKKEIFCPEDTLYHLTSVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSS 62
           ++FWGV + P N  ++   ED+L H++  +LD      +S V + V V   K  IGTLS 
Sbjct: 1   MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGES-VVLSVTVGGAKLVIGTLSQ 59

Query: 63  KRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNLGK--FTDSEGDESDEEVP 115
            + P I  D  F K F+L H+   + V F GY+  N+ +  FT S+ ++  E VP
Sbjct: 60  DKFPQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQDDFTSSDDEDVPEAVP 114



>AT5G03740.1 | chr5:981994-983961 FORWARD LENGTH=295
          Length = 294

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 3   VDFWGVVIEPCNKKEIFCPEDTLYHLTSVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSS 62
           ++FWGV ++      +    D L H++ VAL E+       ++++V V  +K  IGTLS 
Sbjct: 1   MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVTEPIQLYVTVGSDKLLIGTLSH 60

Query: 63  KRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNLGKFTDSEGDESDEEVPPDNMIKE 122
           ++ P +  +   ++NF L HT     V F GY+V           D SD E  P+++I +
Sbjct: 61  EKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKV-----------DASDPE--PEDLIDD 107

Query: 123 AQKSKLPAKSATVASAMQKAFVKEIEHYEKSKADDD 158
            Q      K+A  ++A Q  F    E   K+K DDD
Sbjct: 108 -QLEAAGFKAAPKSAAKQVNFQLPNEDV-KAKQDDD 141



>AT3G44750.1 | chr3:16298045-16299585 FORWARD LENGTH=246
          Length = 245

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%)

Query: 3  VDFWGVVIEPCNKKEIFCPEDTLYHLTSVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSS 62
          ++FWG+ ++      +   E  L H++  +L E    K   V + V+V ++   +GTLS+
Sbjct: 1  MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST 60

Query: 63 KRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNL 99
          +  P +  D  F K F+L HT     V F GY+  N+
Sbjct: 61 ENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPNI 97



>AT2G27840.1 | chr2:11862085-11863707 FORWARD LENGTH=204
          Length = 203

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 12/131 (9%)

Query: 3   VDFWGVVIEPCNKKEIFCPEDTLYHLTSVALDEAYGL-KDSNVKVFVEVNDEK--FAIGT 59
           ++FWG+ I+P    ++   +  + H + V L +   + KD    V+V++ D++  F IG 
Sbjct: 1   MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGN 60

Query: 60  LSSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQVKNLGKFTDSEGDESDEEVPPDNM 119
           LS K  P   +D      F++ H S  S V   GY+       T    DE DEE+  D+ 
Sbjct: 61  LSQK-FPQFSIDLYLGHEFEISHNS-TSSVYLIGYR-------TFDAFDELDEEIDSDSE 111

Query: 120 IKEAQKSKLPA 130
           + E  + ++ A
Sbjct: 112 LDEYMEQQIAA 122



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.124    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,751,117
Number of extensions: 366073
Number of successful extensions: 5228
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5221
Number of HSP's successfully gapped: 11
Length of query: 320
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,392,385
Effective search space: 1854717085
Effective search space used: 1854717085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 112 (47.8 bits)