Os05g0597100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nucleolar histone deacetylase HD2-p39.
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Os05g0597100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nucleolar histone deacetylase HD2-p39.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.68 | 0.411 | 11.4 | 0.595 | 1.81 | 0.503 | 0.957 | 0.492 | -0.0281 | 16.8 | 40.74 | 15 | -- | -- |
| 77.16 | 0.409 | 11.4 | 0.597 | 1.81 | 0.506 | 1.03 | -- | -0.0266 | 16.8 | 41.33 | 14 | -- | -- |
| 78.88 | 0.414 | 11.4 | 0.59 | 1.8 | 0.506 | -- | 0.637 | -0.0348 | 16.8 | 41.16 | 15 | -- | -- |
| 79.88 | 0.416 | 11.4 | 0.612 | 1.82 | 0.497 | -- | -- | -0.0256 | 16.7 | 41.33 | 14 | -- | -- |
| 163.69 | 0.596 | 11.4 | 0.349 | -- | 2.02 | -- | 0.324 | -0.254 | -- | 30.14 | 503 | -- | -- |
| 83.78 | 0.429 | 11.4 | 0.621 | 1.87 | -- | 0.948 | -- | -0.0252 | 16.5 | -- | -- | -- | -- |
| 86.2 | 0.435 | 11.4 | 0.628 | 1.88 | -- | -- | -- | -0.0201 | 16.5 | -- | -- | -- | -- |
| 94.08 | 0.452 | 11.3 | 0.145 | -- | 1.86 | -- | -- | 0.133 | -- | 0.14 | 558 | -- | -- |
| 89.8 | 0.441 | 11.4 | -- | 1.8 | 0.518 | -- | -- | -0.0913 | 16.8 | 41.33 | 14 | -- | -- |
| 275.16 | 0.775 | 11.3 | 0.554 | -- | -- | -- | -- | -0.0697 | -- | -- | -- | -- | -- |
| 96.58 | 0.46 | 11.4 | -- | 1.87 | -- | -- | -- | -0.09 | 16.5 | -- | -- | -- | -- |
| 91.87 | 0.446 | 11.3 | -- | -- | 1.96 | -- | -- | -0.104 | -- | 0.01108 | 561 | -- | -- |
| 283.26 | 0.786 | 11.4 | -- | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.66 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 71.69 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 8 | 72.03 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 10 | 72.13 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 35 | 72.98 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 37 | 73.03 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 39 | 73.08 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 70 | 73.36 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 76 | 73.43 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 101 | 73.61 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 113 | 73.71 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 122 | 73.86 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 123 | 73.86 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 129 | 73.91 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 135 | 73.98 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 140 | 74.02 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 165 | 74.10 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 169 | 74.14 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 170 | 74.15 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 13 |
| 192 | 74.19 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 198 | 74.21 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 14 |
| 200 | 74.23 | humidity | 80.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 213 | 74.28 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 214 | 74.31 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 216 | 74.31 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 224 | 74.34 | humidity | 70.0 | 90 | > th | dose independent | sin | 7 | NA |
| 228 | 74.35 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 229 | 74.35 | radiation | 40.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 232 | 74.35 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 238 | 74.39 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 264 | 74.46 | radiation | 40.0 | 90 | < th | dose independent | sin | 8 | NA |
| 292 | 74.57 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 300 | 74.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 322 | 74.69 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 328 | 74.71 | humidity | 80.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 329 | 74.71 | radiation | 30.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 335 | 74.73 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 338 | 74.75 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 340 | 74.75 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 344 | 74.75 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 348 | 74.76 | wind | 7.0 | 270 | < th | dose dependent | rect. | 8 | 2 |
| 352 | 74.77 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 366 | 74.81 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 368 | 74.81 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 369 | 74.81 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 371 | 74.81 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 372 | 74.81 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 374 | 74.81 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 381 | 74.82 | radiation | 10.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 386 | 74.83 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 388 | 74.84 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 391 | 74.85 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 397 | 74.87 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 402 | 74.88 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 404 | 74.88 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 8 | 5 |
| 424 | 74.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 426 | 74.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 430 | 74.92 | radiation | 40.0 | 270 | > th | dose independent | sin | 11 | NA |
| 458 | 74.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 460 | 74.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 461 | 74.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 464 | 74.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 465 | 74.95 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 467 | 74.95 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 471 | 74.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 479 | 74.97 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 481 | 74.98 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 19 |
| 486 | 74.99 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 487 | 74.99 | radiation | 1.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 491 | 75.01 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 494 | 75.02 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 498 | 75.02 | temperature | 15.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 511 | 75.05 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 513 | 75.05 | wind | 5.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 524 | 75.07 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 529 | 75.08 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 15 | 18 |
| 534 | 75.09 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 537 | 75.09 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 538 | 75.09 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 539 | 75.09 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 544 | 75.10 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 548 | 75.11 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 14 | 18 |
| 607 | 75.16 | radiation | 40.0 | 270 | < th | dose independent | sin | 11 | NA |
| 611 | 75.16 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 613 | 75.17 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 12 |
| 616 | 75.18 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 626 | 75.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 630 | 75.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 641 | 75.21 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 17 |
| 644 | 75.22 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 648 | 75.23 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 651 | 75.24 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 655 | 75.24 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 660 | 75.24 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 662 | 75.24 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 663 | 75.24 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 665 | 75.24 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 666 | 75.24 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 667 | 75.24 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 5 |
| 669 | 75.24 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 673 | 75.24 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 692 | 75.26 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 732 | 75.30 | radiation | 40.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 748 | 75.32 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 756 | 75.33 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 761 | 75.34 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 762 | 75.34 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 792 | 75.37 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 808 | 75.38 | radiation | 40.0 | 90 | > th | dose independent | sin | 8 | NA |
| 823 | 75.40 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 827 | 75.40 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 855 | 75.43 | temperature | 30.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 856 | 75.43 | radiation | 30.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 872 | 75.45 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 10 |
| 925 | 75.48 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 934 | 75.49 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 936 | 75.49 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 968 | 75.50 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 978 | 75.51 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 13 |
| 988 | 75.52 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 990 | 75.52 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 993 | 75.52 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 997 | 75.53 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 3 |