BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0589000 Os05g0589000|AK099181
(378 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0589000 Conserved hypothetical protein 621 e-178
Os01g0604700 Conserved hypothetical protein 452 e-127
Os01g0641700 Conserved hypothetical protein 248 4e-66
>Os05g0589000 Conserved hypothetical protein
Length = 378
Score = 621 bits (1602), Expect = e-178, Method: Compositional matrix adjust.
Identities = 311/378 (82%), Positives = 311/378 (82%)
Query: 1 RSERRNSPTLLTLTVADDFVRRRRXXXXXXXXXXXXXXPEQELKRXXXXXYNYEGDARWA 60
RSERRNSPTLLTLTVADDFVRRRR PEQELKR YNYEGDARWA
Sbjct: 1 RSERRNSPTLLTLTVADDFVRRRRGEAMGGGDASGGDGPEQELKRAAAAAYNYEGDARWA 60
Query: 61 EYWSNILVPPHLASRPDVVDHYKRKFYQRYIDRDLVVEPMSSTGSTQXXXXXXXXXXXXX 120
EYWSNILVPPHLASRPDVVDHYKRKFYQRYIDRDLVVEPMSSTGSTQ
Sbjct: 61 EYWSNILVPPHLASRPDVVDHYKRKFYQRYIDRDLVVEPMSSTGSTQPSGPEVRSSSFSS 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXQTDSATNPLRFDARTIHFSINAWVLVVAGLGMLPILP 180
QTDSATNPLRFDARTIHFSINAWVLVVAGLGMLPILP
Sbjct: 121 SENVRARSSGSSSRSAAPPPPPPQTDSATNPLRFDARTIHFSINAWVLVVAGLGMLPILP 180
Query: 181 KHLADRACKLSLLGTILSSAYSLYSTYGKPRAWNMPAVQGWLQAVLGTKDFIHLMFSLML 240
KHLADRACKLSLLGTILSSAYSLYSTYGKPRAWNMPAVQGWLQAVLGTKDFIHLMFSLML
Sbjct: 181 KHLADRACKLSLLGTILSSAYSLYSTYGKPRAWNMPAVQGWLQAVLGTKDFIHLMFSLML 240
Query: 241 FTSQLHLKIAALPVFCWALDHVARFLRRNFARSSFYRSYLEEPCLWVEXXXXXXXXXXXX 300
FTSQLHLKIAALPVFCWALDHVARFLRRNFARSSFYRSYLEEPCLWVE
Sbjct: 241 FTSQLHLKIAALPVFCWALDHVARFLRRNFARSSFYRSYLEEPCLWVETNNTTLSLLSSN 300
Query: 301 AEIALGFLLIISLFSWQRSIIQTFMYWQVLKQMYHAPVTASYHQSAWAKIGRIVNPYIHR 360
AEIALGFLLIISLFSWQRSIIQTFMYWQVLKQMYHAPVTASYHQSAWAKIGRIVNPYIHR
Sbjct: 301 AEIALGFLLIISLFSWQRSIIQTFMYWQVLKQMYHAPVTASYHQSAWAKIGRIVNPYIHR 360
Query: 361 YAPFLNTPISAAQRWWFR 378
YAPFLNTPISAAQRWWFR
Sbjct: 361 YAPFLNTPISAAQRWWFR 378
>Os01g0604700 Conserved hypothetical protein
Length = 354
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/338 (66%), Positives = 250/338 (73%), Gaps = 1/338 (0%)
Query: 41 QELKRXXXXXYNYEGDARWAEYWSNILVPPHLASRPDVVDHYKRKFYQRYIDRDLVVEPM 100
Q LKR Y+YE D+RWA YWSN+LVPPHLASRPDVVDH+KRKFYQRYID DL+VEPM
Sbjct: 18 QRLKRIGAAAYDYENDSRWAGYWSNVLVPPHLASRPDVVDHFKRKFYQRYIDPDLIVEPM 77
Query: 101 SSTGSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTDSATNPLRFDARTIH 160
SST S+ QT+ N L D RTIH
Sbjct: 78 SST-SSSQSTKPAARSSATPSNENVRARDSGSSARSTAASQPSQTERTANSLWLDGRTIH 136
Query: 161 FSINAWVLVVAGLGMLPILPKHLADRACKLSLLGTILSSAYSLYSTYGKPRAWNMPAVQG 220
FSINAWVLVVA LG+LPILPKH+A +A +LSLLGTI SSAYSLY TYGKPRAWNM A+Q
Sbjct: 137 FSINAWVLVVASLGILPILPKHIASKAYRLSLLGTICSSAYSLYVTYGKPRAWNMAAIQP 196
Query: 221 WLQAVLGTKDFIHLMFSLMLFTSQLHLKIAALPVFCWALDHVARFLRRNFARSSFYRSYL 280
WLQ+++ KDF+HLMFSLM+FTS +H KIA LPV CWALDHVARFLRRNFARSS YR YL
Sbjct: 197 WLQSIIVAKDFVHLMFSLMMFTSNVHYKIALLPVLCWALDHVARFLRRNFARSSLYRQYL 256
Query: 281 EEPCLWVEXXXXXXXXXXXXAEIALGFLLIISLFSWQRSIIQTFMYWQVLKQMYHAPVTA 340
EEPCLWVE AEI LGFL+I+SLFSW+R+IIQTFMY+ +LK MYHAPVT+
Sbjct: 257 EEPCLWVETNNTTLSLLCSNAEITLGFLMIVSLFSWRRNIIQTFMYFHLLKLMYHAPVTS 316
Query: 341 SYHQSAWAKIGRIVNPYIHRYAPFLNTPISAAQRWWFR 378
YHQSAWA+IGR VNPYIHRYAPFLNTPISA QRWW R
Sbjct: 317 GYHQSAWARIGRAVNPYIHRYAPFLNTPISAVQRWWLR 354
>Os01g0641700 Conserved hypothetical protein
Length = 269
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 129/227 (56%), Positives = 163/227 (71%), Gaps = 1/227 (0%)
Query: 152 LRFDARTIHFSINAWVLVVAGLGMLPILPKHLADRACKLSLLGTILSSAYSLYSTYGKPR 211
L+ D R++HFS+ AWVL+VA +G+LP+ P+ L + +LSLLGT ++ Y+L++ Y PR
Sbjct: 44 LQLDQRSLHFSVTAWVLIVALIGILPLTPRQLQYKGYRLSLLGTTCTTGYALFAFYRLPR 103
Query: 212 AWNMPAVQGWLQAVLGTKDFIHLMFSLMLFTSQLHLKIAALPVFCWALDHVARFLRRNFA 271
A NM A Q V +KDFI M+ LM S+LHLK+ +PV CWAL+HVARFLRR+F
Sbjct: 104 AGNMHAAQ-IFHHVASSKDFIPFMYCLMFVMSKLHLKLVLVPVICWALEHVARFLRRHFT 162
Query: 272 RSSFYRSYLEEPCLWVEXXXXXXXXXXXXAEIALGFLLIISLFSWQRSIIQTFMYWQVLK 331
SS YR+YLE+PC WVE AEI LGFLLI+SLFS QR+ +QTFMYWQ+LK
Sbjct: 163 NSSLYRTYLEKPCTWVETNTTAVKFLSSNAEILLGFLLILSLFSRQRNPMQTFMYWQLLK 222
Query: 332 QMYHAPVTASYHQSAWAKIGRIVNPYIHRYAPFLNTPISAAQRWWFR 378
MYH+P TA YH++ W KIGR VNPYIHRY PFL+ PI+A RWWFR
Sbjct: 223 LMYHSPFTAGYHRAIWLKIGRTVNPYIHRYTPFLHDPINAGMRWWFR 269
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,626,105
Number of extensions: 353490
Number of successful extensions: 835
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 4
Length of query: 378
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 275
Effective length of database: 11,657,759
Effective search space: 3205883725
Effective search space used: 3205883725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)