Os05g0589000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0589000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.93 | 0.21 | 12.6 | 0.401 | 0.0745 | -0.3 | -0.98 | 0.364 | 0.291 | 10.8 | 0.7242 | 51 | -- | -- |
| 20.05 | 0.209 | 12.6 | 0.393 | 0.0825 | -0.302 | -0.59 | -- | 0.285 | 10.5 | 0.7491 | 50 | -- | -- |
| 21.04 | 0.214 | 12.6 | 0.314 | 0.106 | -0.309 | -- | -0.234 | 0.322 | 16 | 0.44 | 110 | -- | -- |
| 21.4 | 0.215 | 12.6 | 0.356 | 0.082 | -0.308 | -- | -- | 0.282 | 12 | 0.774 | 51 | -- | -- |
| 20.78 | 0.212 | 12.6 | 0.385 | -- | -0.249 | -- | -0.344 | 0.334 | -- | 0.77 | 55 | -- | -- |
| 22.09 | 0.22 | 12.6 | 0.365 | 0.274 | -- | 0.547 | -- | 0.279 | 23.7 | -- | -- | -- | -- |
| 23.37 | 0.226 | 12.6 | 0.343 | 0.272 | -- | -- | -- | 0.277 | 0.0322 | -- | -- | -- | -- |
| 21.51 | 0.216 | 12.6 | 0.355 | -- | -0.249 | -- | -- | 0.287 | -- | 0.54 | 60 | -- | -- |
| 24.78 | 0.232 | 12.6 | -- | 0.127 | -0.341 | -- | -- | 0.262 | 12.1 | 0.7799 | 54 | -- | -- |
| 28.03 | 0.247 | 12.6 | 0.351 | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
| 26.46 | 0.241 | 12.6 | -- | 0.277 | -- | -- | -- | 0.238 | 0.102 | -- | -- | -- | -- |
| 24.83 | 0.232 | 12.6 | -- | -- | -0.248 | -- | -- | 0.249 | -- | 0.7409 | 61 | -- | -- |
| 31.28 | 0.261 | 12.6 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.28 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 2 | 17.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 4 | 17.48 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 9 | 17.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 16 | 17.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 84 | 18.64 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 112 | 18.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 167 | 19.04 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 4 |
| 178 | 19.05 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 259 | 19.25 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 20 |
| 268 | 19.26 | temperature | 10 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 289 | 19.31 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 22 |
| 305 | 19.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 306 | 19.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 321 | 19.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 322 | 19.38 | radiation | 1 | 30 | < th | dose independent | sin | 11 | NA |
| 325 | 19.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 6 |
| 326 | 19.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 340 | 19.40 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 7 |
| 354 | 19.43 | radiation | 1 | 30 | < th | dose dependent | sin | 11 | NA |
| 370 | 19.44 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 399 | 19.46 | temperature | 25 | 90 | < th | dose dependent | sin | 14 | NA |
| 404 | 19.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 422 | 19.50 | temperature | 20 | 10 | > th | dose independent | sin | 12 | NA |
| 439 | 19.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 446 | 19.52 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 4 |
| 463 | 19.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 476 | 19.56 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 14 |
| 521 | 19.60 | wind | 3 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 524 | 19.61 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 532 | 19.61 | wind | 3 | 30 | < th | dose dependent | rect. | 22 | 7 |
| 539 | 19.62 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 8 |
| 542 | 19.62 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 10 |
| 582 | 19.65 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 6 |
| 641 | 19.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 660 | 19.69 | temperature | 20 | 90 | < th | dose independent | sin | 13 | NA |
| 661 | 19.69 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 703 | 19.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 706 | 19.72 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 8 |
| 753 | 19.74 | wind | 3 | 30 | < th | dose dependent | rect. | 18 | 11 |
| 767 | 19.75 | humidity | 80 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 786 | 19.76 | temperature | 20 | 10 | < th | dose independent | sin | 12 | NA |
| 787 | 19.76 | radiation | 1 | 90 | > th | dose independent | sin | 12 | NA |
| 788 | 19.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 790 | 19.76 | humidity | 80 | 30 | > th | dose independent | rect. | 20 | 9 |
| 794 | 19.76 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 811 | 19.77 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 878 | 19.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 883 | 19.80 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 10 |
| 942 | 19.82 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 947 | 19.82 | radiation | 1 | 30 | > th | dose independent | rect. | 12 | 23 |
| 967 | 19.82 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 983 | 19.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 986 | 19.83 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 20 | 9 |