BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0589000 Os05g0589000|AK099181
         (378 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02420.1  | chr3:496179-498772 REVERSE LENGTH=349              369   e-102

>AT3G02420.1 | chr3:496179-498772 REVERSE LENGTH=349
          Length = 348

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/341 (54%), Positives = 232/341 (68%), Gaps = 2/341 (0%)

Query: 40  EQELKRXXXXXYNYEGDARWAEYWSNILVPPHLASRPDVVDHYKRKFYQRYIDRDLVVEP 99
            Q LK+     ++YE DARWA+YWSNIL+PPH+ASRP+VVDH+KRKFYQRYID DLVVEP
Sbjct: 8   SQRLKKIAAAAFDYENDARWADYWSNILIPPHMASRPEVVDHFKRKFYQRYIDPDLVVEP 67

Query: 100 MSSTGSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTDSATNP--LRFDAR 157
           MS++ S+                                        +   P  +R+D +
Sbjct: 68  MSTSSSSSQSARPTATSASSTASSNANEQVRSRNSGSVPRTSGPSATTGATPSSMRWDEQ 127

Query: 158 TIHFSINAWVLVVAGLGMLPILPKHLADRACKLSLLGTILSSAYSLYSTYGKPRAWNMPA 217
           TI FS+NAWV V+A L +LP++PK+L++RA +LS +GT  SS YSLYS YG+PRAWNM  
Sbjct: 128 TIQFSVNAWVFVIAVLAVLPLIPKNLSNRAYRLSFMGTACSSLYSLYSLYGRPRAWNMQG 187

Query: 218 VQGWLQAVLGTKDFIHLMFSLMLFTSQLHLKIAALPVFCWALDHVARFLRRNFARSSFYR 277
           +Q + Q+++  KDFI+ ++ L   TS L LK A +P+ C AL+ VA+FLRRNF RS+ YR
Sbjct: 188 LQVYFQSIVAAKDFIYFIYCLTFVTSHLCLKFALIPILCRALEQVAKFLRRNFGRSTIYR 247

Query: 278 SYLEEPCLWVEXXXXXXXXXXXXAEIALGFLLIISLFSWQRSIIQTFMYWQVLKQMYHAP 337
            YLE+PC+WVE            AEIA+GFLLIISL SWQR+IIQTFMYWQ+LK MY AP
Sbjct: 248 KYLEDPCVWVESNTTTLNILSSQAEIAIGFLLIISLLSWQRNIIQTFMYWQLLKLMYQAP 307

Query: 338 VTASYHQSAWAKIGRIVNPYIHRYAPFLNTPISAAQRWWFR 378
           VTA YHQS W++IGR V P I RYAPFLNTP+SA QRWWFR
Sbjct: 308 VTAGYHQSTWSRIGRTVTPIIQRYAPFLNTPVSAVQRWWFR 348



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.137    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,701,854
Number of extensions: 223736
Number of successful extensions: 539
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 278
Effective length of database: 8,364,969
Effective search space: 2325461382
Effective search space used: 2325461382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)