BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0584300 Os05g0584300|AK063149
         (247 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0584548                                                      296   8e-81
Os05g0584300  Harpin-induced 1 domain containing protein          296   8e-81
Os01g0736500  Harpin-induced 1 domain containing protein           96   3e-20
Os05g0526700  Harpin-induced 1 domain containing protein           76   2e-14

>Os05g0584548 
          Length = 247

 Score =  296 bits (759), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 157/208 (75%), Positives = 157/208 (75%)

Query: 40  EIAKPAEQHGHGSRLLRRACCXXXXXXXXXXXXXXXXXXXXXKVRDPTLSMDSVTVERFH 99
           EIAKPAEQHGHGSRLLRRACC                     KVRDPTLSMDSVTVERFH
Sbjct: 40  EIAKPAEQHGHGSRLLRRACCALGVVAAVAAVAMLVLSLTVLKVRDPTLSMDSVTVERFH 99

Query: 100 VGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFYVDGVPEYVGLGSAPPGEVA 159
           VGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFYVDGVPEYVGLGSAPPGEVA
Sbjct: 100 VGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFYVDGVPEYVGLGSAPPGEVA 159

Query: 160 ARGTSRVRVGMDVFVDRVGAAVVGEVLFGRGEVRLASHTAVDGRVSVLGGLYGXXXXXXX 219
           ARGTSRVRVGMDVFVDRVGAAVVGEVLFGRGEVRLASHTAVDGRVSVLGGLYG       
Sbjct: 160 ARGTSRVRVGMDVFVDRVGAAVVGEVLFGRGEVRLASHTAVDGRVSVLGGLYGRRAVRVA 219

Query: 220 XXXXXXXXXXXXXXXXXXXXXXXDFSSH 247
                                  DFSSH
Sbjct: 220 MRCRVVLRVSAAVVVAGSPSCVADFSSH 247



>Os05g0584300 Harpin-induced 1 domain containing protein
          Length = 247

 Score =  296 bits (759), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 157/208 (75%), Positives = 157/208 (75%)

Query: 40  EIAKPAEQHGHGSRLLRRACCXXXXXXXXXXXXXXXXXXXXXKVRDPTLSMDSVTVERFH 99
           EIAKPAEQHGHGSRLLRRACC                     KVRDPTLSMDSVTVERFH
Sbjct: 40  EIAKPAEQHGHGSRLLRRACCALGVVAAVAAVAMLVLSLTVLKVRDPTLSMDSVTVERFH 99

Query: 100 VGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFYVDGVPEYVGLGSAPPGEVA 159
           VGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFYVDGVPEYVGLGSAPPGEVA
Sbjct: 100 VGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFYVDGVPEYVGLGSAPPGEVA 159

Query: 160 ARGTSRVRVGMDVFVDRVGAAVVGEVLFGRGEVRLASHTAVDGRVSVLGGLYGXXXXXXX 219
           ARGTSRVRVGMDVFVDRVGAAVVGEVLFGRGEVRLASHTAVDGRVSVLGGLYG       
Sbjct: 160 ARGTSRVRVGMDVFVDRVGAAVVGEVLFGRGEVRLASHTAVDGRVSVLGGLYGRRAVRVA 219

Query: 220 XXXXXXXXXXXXXXXXXXXXXXXDFSSH 247
                                  DFSSH
Sbjct: 220 MRCRVVLRVSAAVVVAGSPSCVADFSSH 247



>Os01g0736500 Harpin-induced 1 domain containing protein
          Length = 251

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 5/128 (3%)

Query: 82  KVRDPTLSMDSVTVERFHVGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFYV 141
           KV+DP L+M+ VT+E      GT +  P+ +N TL A + ++NPN  S RF  S T+FY 
Sbjct: 92  KVKDPELTMNRVTLEGLDGDLGT-SRHPVSVNATLNADVSLRNPNVASFRFDRSETDFYY 150

Query: 142 DGVPEYVGLGSAPPGEVAARGTSRVRVGMDVFVDRVGAAV-VGEVLFGRGEVRLASHTAV 200
            G  E VG+  AP GEV A  T R+ V +DV  DR+   V   +++FG+G   L S+T +
Sbjct: 151 AG--ETVGVAYAPEGEVGADSTVRMNVTLDVLADRISPNVNATDLIFGQG-YNLTSYTEI 207

Query: 201 DGRVSVLG 208
            GRV+VLG
Sbjct: 208 SGRVNVLG 215



>Os05g0526700 Harpin-induced 1 domain containing protein
          Length = 253

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 4/129 (3%)

Query: 82  KVRDPTLSMDSVTVERFHVGFGTEAS--RPLRINVTLVAGIVIKNPNYESMRFGTSTTEF 139
           +V+DP ++M+ V V     G GT A     +  N TL A + +KNPN  S+RF  S T+ 
Sbjct: 80  RVKDPRITMNGVWVTAISTGPGTGAGIGSTVATNATLTADVSVKNPNAASLRFSRSETDV 139

Query: 140 YVDGVPEYVGLGSAPPGEVAARGTSRVRVGMDVFVDRVGAAVVGEVLFGRGEVRLASHTA 199
           Y  G  + V +   P G V A  T R+ + +D+  DR+ + + G  L    E  L ++TA
Sbjct: 140 YYKG--KTVSVAYVPAGSVGADRTVRMNITLDLLADRLASVLNGTGLILGQEYDLTTYTA 197

Query: 200 VDGRVSVLG 208
           +  RVSVLG
Sbjct: 198 MRARVSVLG 206



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,341,150
Number of extensions: 189643
Number of successful extensions: 432
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 5
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)