Os01g0736500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os01g0736500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 292.66 | 0.804 | 6.44 | 2.53 | 1.19 | 1.57 | -1.26 | 6.27 | 0.728 | 15.6 | 45.96 | 4132 | -- | -- |
| 320.25 | 0.833 | 6.44 | 2.37 | 0.959 | 1.49 | -1.89 | -- | 0.617 | 15.8 | 29.99 | 4581 | -- | -- |
| 297.52 | 0.803 | 6.44 | 2.51 | 1.18 | 1.59 | -- | 6.38 | 0.722 | 15.6 | 46.04 | 4132 | -- | -- |
| 323.02 | 0.837 | 6.42 | 2.36 | 1.01 | 1.4 | -- | -- | 0.614 | 15.9 | 30 | 4590 | -- | -- |
| 364.26 | 0.889 | 6.46 | 2.59 | -- | 2.09 | -- | 6.18 | 0.699 | -- | 45.52 | 4645 | -- | -- |
| 350.52 | 0.878 | 6.39 | 2.18 | 1.1 | -- | -1.5 | -- | 0.74 | 15.8 | -- | -- | -- | -- |
| 357.19 | 0.885 | 6.4 | 2.16 | 1.09 | -- | -- | -- | 0.732 | 15.9 | -- | -- | -- | -- |
| 373.44 | 0.9 | 6.46 | 2.46 | -- | 1.63 | -- | -- | 0.829 | -- | -2.711e-06 | 4727 | -- | -- |
| 462.2 | 1 | 6.41 | -- | 0.965 | 1.02 | -- | -- | 0.493 | 15.9 | 30 | 4596 | -- | -- |
| 422.89 | 0.961 | 6.39 | 2.12 | -- | -- | -- | -- | 0.703 | -- | -- | -- | -- | -- |
| 480.3 | 1.03 | 6.45 | -- | 1.05 | -- | -- | -- | 0.491 | 15.9 | -- | -- | -- | -- |
| 494.88 | 1.04 | 6.49 | -- | -- | 1.54 | -- | -- | 0.27 | -- | -26.42 | 4754 | -- | -- |
| 541.02 | 1.09 | 6.45 | -- | -- | -- | -- | -- | 0.468 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 285.42 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 2 | 285.57 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 20 | 286.20 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 17 | 16 |
| 21 | 286.36 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 22 | 286.39 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 23 | 287.14 | wind | 5.0 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 26 | 287.53 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 29 | 287.84 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 33 | 288.20 | radiation | 40.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 34 | 288.22 | wind | 5.0 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 42 | 288.53 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 50 | 289.03 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 67 | 289.08 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 71 | 289.20 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 76 | 289.33 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 80 | 289.49 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 85 | 289.55 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 86 | 289.61 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 88 | 289.65 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 89 | 289.65 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 95 | 289.73 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 100 | 289.84 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 103 | 289.85 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 106 | 289.89 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 111 | 289.95 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 115 | 290.00 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 132 | 290.17 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 134 | 290.17 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 147 | 290.39 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 152 | 290.46 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 184 | 290.67 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 208 | 290.76 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 211 | 290.82 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 213 | 290.86 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 225 | 290.92 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 228 | 290.93 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 250 | 291.02 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 261 | 291.08 | radiation | 20.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 276 | 291.13 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 354 | 291.43 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 14 | 20 |
| 429 | 291.66 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 439 | 291.68 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 506 | 291.85 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 536 | 291.92 | temperature | 10.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 555 | 291.97 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 599 | 292.03 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 604 | 292.04 | radiation | 40.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 611 | 292.05 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 645 | 292.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 660 | 292.12 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 682 | 292.15 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 686 | 292.15 | temperature | 30.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 694 | 292.16 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 767 | 292.29 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 842 | 292.41 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 23 | NA |