BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0736500 Os01g0736500|AK111351
(251 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0736500 Harpin-induced 1 domain containing protein 393 e-110
Os05g0526700 Harpin-induced 1 domain containing protein 203 1e-52
Os05g0584548 112 2e-25
Os05g0584300 Harpin-induced 1 domain containing protein 112 2e-25
Os02g0265800 75 4e-14
Os05g0312400 67 1e-11
>Os01g0736500 Harpin-induced 1 domain containing protein
Length = 251
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/251 (79%), Positives = 200/251 (79%)
Query: 1 MATVGPYGEAEKNEPARPLALPSPSVHPXXXXXXXXXXXXXXXXXXXXXNKXXXXXXXXX 60
MATVGPYGEAEKNEPARPLALPSPSVHP NK
Sbjct: 1 MATVGPYGEAEKNEPARPLALPSPSVHPAANDDEEAARAAAAAAGDTAANKRPRSPQYLR 60
Query: 61 XXXCVIWCGGCCXXXXXXXXXXXXXXXXXXFKVKDPELTMNRVTLEGLDGDLGTSRHPVS 120
CVIWCGGCC FKVKDPELTMNRVTLEGLDGDLGTSRHPVS
Sbjct: 61 RRRCVIWCGGCCVTSAVVVGIVILVLALTVFKVKDPELTMNRVTLEGLDGDLGTSRHPVS 120
Query: 121 VNATLNADVSLRNPNVASFRFDRSETDFYYAGETVGVAYAPEGEVGADSTVRMNVTLDVL 180
VNATLNADVSLRNPNVASFRFDRSETDFYYAGETVGVAYAPEGEVGADSTVRMNVTLDVL
Sbjct: 121 VNATLNADVSLRNPNVASFRFDRSETDFYYAGETVGVAYAPEGEVGADSTVRMNVTLDVL 180
Query: 181 ADRISPNVNATDLIFGQGYNLTSYTEISGRVNVLGIYKRNLDIKMNCSITLEVSALSTVQ 240
ADRISPNVNATDLIFGQGYNLTSYTEISGRVNVLGIYKRNLDIKMNCSITLEVSALSTVQ
Sbjct: 181 ADRISPNVNATDLIFGQGYNLTSYTEISGRVNVLGIYKRNLDIKMNCSITLEVSALSTVQ 240
Query: 241 SKSTNCVASVS 251
SKSTNCVASVS
Sbjct: 241 SKSTNCVASVS 251
>Os05g0526700 Harpin-induced 1 domain containing protein
Length = 253
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 143/254 (56%), Gaps = 22/254 (8%)
Query: 12 KNEPARPLALPSPSVHPXXXXXXXXXXXXXXXXXXXXXNKXXXXXXXXXXXXCVIWCGGC 71
KNEPARP A+PSPSVHP + C C GC
Sbjct: 8 KNEPARPFAVPSPSVHPAATGVGEEEEAQAATGW-----RSMQYLRKRRRALC---CCGC 59
Query: 72 CXXXXXXXXXXXXXXXXXXFKVKDPELTMNRVTLEGLDGDLGTSR---HPVSVNATLNAD 128
C F+VKDP +TMN V + + GT V+ NATL AD
Sbjct: 60 CVTTLVVVGLVILVLALTVFRVKDPRITMNGVWVTAISTGPGTGAGIGSTVATNATLTAD 119
Query: 129 VSLRNPNVASFRFDRSETDFYYAGETVGVAYAPEGEVGADSTVRMNVTLDVLADRISPNV 188
VS++NPN AS RF RSETD YY G+TV VAY P G VGAD TVRMN+TLD+LADR++ +
Sbjct: 120 VSVKNPNAASLRFSRSETDVYYKGKTVSVAYVPAGSVGADRTVRMNITLDLLADRLASVL 179
Query: 189 NATDLIFGQGYNLTSYTEISGRVNVLGIYKRNLDIKMNCSITLEVSAL-----------S 237
N T LI GQ Y+LT+YT + RV+VLGI K++LD++MNCS+ L+V+ + S
Sbjct: 180 NGTGLILGQEYDLTTYTAMRARVSVLGIIKKSLDVRMNCSVILDVAGIAGVLLPGDGAKS 239
Query: 238 TVQSKSTNCVASVS 251
VQ++S +CVA VS
Sbjct: 240 GVQTRSVDCVAIVS 253
>Os05g0584548
Length = 247
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 91 FKVKDPELTMNRVTLEGLDGDLGT-SRHPVSVNATLNADVSLRNPNVASFRFDRSETDFY 149
KV+DP L+M+ VT+E GT + P+ +N TL A + ++NPN S RF S T+FY
Sbjct: 81 LKVRDPTLSMDSVTVERFHVGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFY 140
Query: 150 YAG--ETVGVAYAPEGEVGADSTVRMNVTLDVLADRISPNVNATDLIFGQG-YNLTSYTE 206
G E VG+ AP GEV A T R+ V +DV DR+ V +++FG+G L S+T
Sbjct: 141 VDGVPEYVGLGSAPPGEVAARGTSRVRVGMDVFVDRVGAAV-VGEVLFGRGEVRLASHTA 199
Query: 207 ISGRVNVL-GIY-KRNLDIKMNCSITLEVSALSTVQSKSTNCVASVS 251
+ GRV+VL G+Y +R + + M C + L VSA + V + S +CVA S
Sbjct: 200 VDGRVSVLGGLYGRRAVRVAMRCRVVLRVSA-AVVVAGSPSCVADFS 245
>Os05g0584300 Harpin-induced 1 domain containing protein
Length = 247
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 91 FKVKDPELTMNRVTLEGLDGDLGT-SRHPVSVNATLNADVSLRNPNVASFRFDRSETDFY 149
KV+DP L+M+ VT+E GT + P+ +N TL A + ++NPN S RF S T+FY
Sbjct: 81 LKVRDPTLSMDSVTVERFHVGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFY 140
Query: 150 YAG--ETVGVAYAPEGEVGADSTVRMNVTLDVLADRISPNVNATDLIFGQG-YNLTSYTE 206
G E VG+ AP GEV A T R+ V +DV DR+ V +++FG+G L S+T
Sbjct: 141 VDGVPEYVGLGSAPPGEVAARGTSRVRVGMDVFVDRVGAAV-VGEVLFGRGEVRLASHTA 199
Query: 207 ISGRVNVL-GIY-KRNLDIKMNCSITLEVSALSTVQSKSTNCVASVS 251
+ GRV+VL G+Y +R + + M C + L VSA + V + S +CVA S
Sbjct: 200 VDGRVSVLGGLYGRRAVRVAMRCRVVLRVSA-AVVVAGSPSCVADFS 245
>Os02g0265800
Length = 201
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Query: 91 FKVKDPELTMNRVTLEGLDGDLGTSRHPVS-VNATLNADVSLRNPNVASFRFDRSETDFY 149
F+V++P +TMN ++++G G S + T+ ADVS+RNPN AS R+ S+T Y
Sbjct: 41 FRVREPVMTMNAISVKGFGGAAPGGGGGSSPLWMTVVADVSVRNPNAASLRYAGSKTAVY 100
Query: 150 YAGETVGVAYAPEGEVGADSTVRMNVTLDVLADRISPNVNATDLIFGQGYNLTSYTEISG 209
Y VG A P G A TVR+NVT+ V + + + +T+ T + G
Sbjct: 101 YRAARVGGASGPPGTARARRTVRLNVTVSVAVGALLGDPGFLGDVAAGAVAVTTATTVRG 160
Query: 210 RVNVL-GIYKRNLDIKMNCSITLEVSALS 237
RV VL G+ +R + ++MNC+ T+ V+ +S
Sbjct: 161 RVAVLGGVVRRRVVLEMNCTATVAVADMS 189
>Os05g0312400
Length = 213
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 120 SVNATLNADVSLRNPN-VASFRFDRSETDFYYAGETVGVAYAPEGEVGADSTVRMNVTLD 178
SVNATL+A +++RNP+ VA+F D + YY G A P G V + + V L
Sbjct: 80 SVNATLDAVLAIRNPSPVAAFAHDAGRAEVYYRGALAADADVPPGRVAPRGSEALAVRLT 139
Query: 179 VLADRI---SPNVNATDLIFGQG-YNLTSYTEISGRVNVLGIYKRNLDIKMNCSITLEV 233
VLADR+ +P + D++ G +LT T + G V VLG+++R+ + C + L V
Sbjct: 140 VLADRLAGRAPELYG-DVVGAAGDVSLTVRTTVPGTVTVLGVFRRHAVVITACDVALSV 197
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,321,499
Number of extensions: 203333
Number of successful extensions: 430
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 7
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)