Os05g0584300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os05g0584300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.07 | 0.345 | 11 | -0.514 | 1.37 | 0.82 | 0.279 | -0.439 | 0.227 | 4.1 | 21.39 | 1684 | -- | -- |
| 54.46 | 0.344 | 11 | -0.406 | 1.37 | 0.862 | 0.328 | -- | 0.251 | 4.07 | 21.4 | 1631 | -- | -- |
| 54.27 | 0.343 | 11 | -0.514 | 1.37 | 0.819 | -- | -0.44 | 0.227 | 4.12 | 21.39 | 1661 | -- | -- |
| 54.68 | 0.344 | 11 | -0.4 | 1.36 | 0.852 | -- | -- | 0.251 | 4.12 | 21.33 | 1631 | -- | -- |
| 146.98 | 0.565 | 11 | -0.395 | -- | 0.9 | -- | -0.212 | 0.228 | -- | 21.81 | 1160 | -- | -- |
| 74.74 | 0.405 | 10.9 | -0.033 | 1.36 | -- | 0.207 | -- | 0.491 | 4.09 | -- | -- | -- | -- |
| 74.85 | 0.405 | 10.9 | -0.0353 | 1.37 | -- | -- | -- | 0.49 | 4.11 | -- | -- | -- | -- |
| 147.09 | 0.565 | 11 | -0.357 | -- | 0.932 | -- | -- | 0.226 | -- | 21.9 | 1154 | -- | -- |
| 57.08 | 0.352 | 11 | -- | 1.32 | 0.696 | -- | -- | 0.284 | 4.21 | 21.9 | 1241 | -- | -- |
| 176.27 | 0.62 | 10.9 | 0.02 | -- | -- | -- | -- | 0.526 | -- | -- | -- | -- | -- |
| 74.89 | 0.405 | 10.9 | -- | 1.37 | -- | -- | -- | 0.494 | 4.11 | -- | -- | -- | -- |
| 148.76 | 0.568 | 11 | -- | -- | 0.784 | -- | -- | 0.289 | -- | 22.2 | 1141 | -- | -- |
| 176.28 | 0.62 | 10.9 | -- | -- | -- | -- | -- | 0.524 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 13 | 54.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 24 | 54.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 59 | 54.73 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 61 | 54.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 96 | 54.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 10 |
| 217 | 55.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 260 | 55.36 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 279 | 55.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 471 | 55.78 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 580 | 55.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 581 | 55.93 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 627 | 56.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 661 | 56.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 744 | 56.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 763 | 56.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 771 | 56.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 796 | 56.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 813 | 56.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 856 | 56.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 872 | 56.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 899 | 56.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 900 | 56.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 903 | 56.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 924 | 56.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 930 | 56.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 970 | 56.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 997 | 56.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |