BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0584300 Os05g0584300|AK063149
         (247 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46150.1  | chr2:18961424-18962089 FORWARD LENGTH=222           67   9e-12

>AT2G46150.1 | chr2:18961424-18962089 FORWARD LENGTH=222
          Length = 221

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 3/128 (2%)

Query: 82  KVRDPTLSMDSVTVERFHVGFGTEASRPLRINVTLVAGIVIKNPNYESMRFGTSTTEFYV 141
           +V+DP + M+ V V       GT   + L  N++++  + +KNPN  S ++  +TT+ Y 
Sbjct: 62  RVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTTTDIYY 121

Query: 142 DGVPEYVGLGSAPPGEVAARGTSRVRVGMDVFVDRVGAAV-VGEVLFGRGEVRLASHTAV 200
            G    VG     PG+     TSR+ V +D+ +DR+ +   +G  +   G V + S+T V
Sbjct: 122 KG--TLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWSYTRV 179

Query: 201 DGRVSVLG 208
            G+V ++G
Sbjct: 180 GGKVKIMG 187



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,179,853
Number of extensions: 107132
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 151
Effective length of database: 8,474,633
Effective search space: 1279669583
Effective search space used: 1279669583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)