BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0736500 Os01g0736500|AK111351
(251 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46150.1 | chr2:18961424-18962089 FORWARD LENGTH=222 112 1e-25
AT3G54200.1 | chr3:20065731-20066438 FORWARD LENGTH=236 73 1e-13
AT3G05975.1 | chr3:1792145-1792714 REVERSE LENGTH=190 59 3e-09
AT4G23930.1 | chr4:12436131-12436694 REVERSE LENGTH=188 58 5e-09
AT4G23610.1 | chr4:12314037-12314723 FORWARD LENGTH=229 58 5e-09
AT1G64065.1 | chr1:23778628-23779272 FORWARD LENGTH=215 49 3e-06
>AT2G46150.1 | chr2:18961424-18962089 FORWARD LENGTH=222
Length = 221
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 66 IWCGGCCXXXXXXXXXXXXXXXXXXFKVKDPELTMNRVTLEGLDGDLGTSR-HPVSVNAT 124
I C C F+VKDP + MN V + GLD GT++ + N +
Sbjct: 36 IKCSICVTATSLILTTIVLTLVFTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNIS 95
Query: 125 LNADVSLRNPNVASFRFDRSETDFYYAGETVGVAYAPEGEVGADSTVRMNVTLDVLADRI 184
+ DVS++NPN ASF++ + TD YY G VG A+ G+ T RMNVT+D++ DRI
Sbjct: 96 MIVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRI 155
Query: 185 SPNVNATDLIFGQGY-NLTSYTEISGRVNVLGIYKRNLDIKMNCSITLEVSA 235
+ I G N+ SYT + G+V ++GI K+++ +KMNC++ + ++
Sbjct: 156 LSDPGLGREISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITG 207
>AT3G54200.1 | chr3:20065731-20066438 FORWARD LENGTH=236
Length = 235
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 68/128 (53%)
Query: 91 FKVKDPELTMNRVTLEGLDGDLGTSRHPVSVNATLNADVSLRNPNVASFRFDRSETDFYY 150
FK K P T++ VT++ L + V +N TLN D+SL+NPN F +D S Y
Sbjct: 77 FKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALLNY 136
Query: 151 AGETVGVAYAPEGEVGADSTVRMNVTLDVLADRISPNVNATDLIFGQGYNLTSYTEISGR 210
G+ +G A P + A TV +N+TL ++ADR+ + L ++ +++G+
Sbjct: 137 RGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVTGK 196
Query: 211 VNVLGIYK 218
V VL I+K
Sbjct: 197 VTVLKIFK 204
>AT3G05975.1 | chr3:1792145-1792714 REVERSE LENGTH=190
Length = 189
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 91 FKVKDPELTMNRVTLEGLDGDLGTSRHPVSVNATLNADVSLRNPNVASFRFDRSETDFYY 150
FK K P L T++G+ ++ + V +N TL ++ L+NPNVA F + E YY
Sbjct: 31 FKPKHPILQTVSSTVDGISTNISLP-YEVQLNFTLTLEMLLKNPNVADFEYKTVENLVYY 89
Query: 151 AGETVGVAYAPEGEVGADSTVRMNVTLDVLADRISPNVN--ATDLIFGQGYNLTSYTEIS 208
VG P + A +V + L + D+ N+ D++ G+ + + ++
Sbjct: 90 RDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGK-IVMETRAKMP 148
Query: 209 GRVNVLGIYKRNLDIKMNCSITL 231
G++ +LGI+K LD +C++ L
Sbjct: 149 GKITLLGIFKIPLDSISHCNLVL 171
>AT4G23930.1 | chr4:12436131-12436694 REVERSE LENGTH=188
Length = 187
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 91 FKVKDPELTMNRVTLEGLDGDLGTSRHPVSVNATLNADVSLRNPNVASFRFDRSETDFYY 150
F+ +DPE+++ V + S SV+ T + ++RNPN A+F + +Y
Sbjct: 33 FRPRDPEISVTSVKVPSF------SVANSSVSFTFSQFSAVRNPNRAAFSHYNNVIQLFY 86
Query: 151 AGETVGVAYAPEGEVGADSTVRMNVTLDVLADRISPNVNATDLIF--------GQGYNLT 202
G +G + P GE+ + T RM T V + ++ ++ G +
Sbjct: 87 YGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASSSQISAAQFQNSDRSGSTVEIE 146
Query: 203 SYTEISGRVNVLGIYKRNLDIKMNCSITLEVS 234
S E++GRV VLG++ + K NC I + S
Sbjct: 147 SKLEMAGRVRVLGLFTHRIAAKCNCRIAISSS 178
>AT4G23610.1 | chr4:12314037-12314723 FORWARD LENGTH=229
Length = 228
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 65 VIWCGGCCXXXXXXXXXXXXXXXXXXFKVKDPELTMNRVTL----EGLDGDLGTSRHPVS 120
+I C G F + P LT++ ++ + ++G + T++
Sbjct: 48 LILCCGFIASLTMLIAVTFIVLSLTVFHLHSPNLTVDSISFNQRFDFVNGKVNTNQ---- 103
Query: 121 VNATLNADVSLRNPNVASFRFDRSETDFYYAGE--TVGVAYAPEGEVGADSTVRMNVTLD 178
N T++ ++SL NPN A F FY+ GE VG + + A TV+MN+T +
Sbjct: 104 -NTTVSVEISLHNPNPALFIVKNVNVSFYH-GELVVVGESIRRSETIPAKRTVKMNLTAE 161
Query: 179 VLADRISPNV-NATDLIFGQGYNLTSYTEISGRVNVLGIYKRNLDIKMNCSITL 231
++ ++ ++ + + G+G +L S E+ GRV + I+++ + ++ +C + +
Sbjct: 162 IVKTKLLASLPGLMEDLNGRGVDLKSSVEVRGRVKKMKIFRKTVHLQTDCFMKM 215
>AT1G64065.1 | chr1:23778628-23779272 FORWARD LENGTH=215
Length = 214
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 91 FKVKDPELTMNRVTLEGLDGDLGTSRHPVSVNATLNADVSLRNPNVASFRFDRSETDFYY 150
++ PE+ ++ L G S +P NATL +D+S+RN N +F F+ S Y
Sbjct: 62 LRISKPEIETRSISTRDLRSG-GNSTNPY-FNATLVSDISIRNSNFGAFEFEDSTLRVVY 119
Query: 151 AGETVGVAYAPEG-EVGADSTVRMN-VTLDVLADRISPNVNA-TDLIFGQGYNLTSYTEI 207
A V EG V A TVR+ V +++ + R+ + DL G L S E+
Sbjct: 120 ADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDLRLG-FLELRSVAEV 178
Query: 208 SGRVNVLGIYKRNLDIKMNCSITLEVSA 235
GR+ VLG + + + M+C++ L ++
Sbjct: 179 RGRIKVLGRKRWKVSV-MSCTMRLNLTG 205
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,077,940
Number of extensions: 136604
Number of successful extensions: 333
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 6
Length of query: 251
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 155
Effective length of database: 8,474,633
Effective search space: 1313568115
Effective search space used: 1313568115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)