BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0579500 Os05g0579500|AK121528
         (121 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0579500  Conserved hypothetical protein                      164   1e-41
Os11g0678600                                                      100   4e-22
Os08g0402700  Conserved hypothetical protein                       92   6e-20

>Os05g0579500 Conserved hypothetical protein
          Length = 121

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 85/121 (70%)

Query: 1   MARRDGHHTHDATDWCVVADRFEVDPWRRVGGEQDLQSGGGAVRLSFETHHGGGVXXXXX 60
           MARRDGHHTHDATDWCVVADRFEVDPWRRVGGEQDLQSGGGAVRLSFETHHGGGV     
Sbjct: 1   MARRDGHHTHDATDWCVVADRFEVDPWRRVGGEQDLQSGGGAVRLSFETHHGGGVAPSPE 60

Query: 61  XXXXXXXXXXXXIMVXXXXXXXXXXVHHDRPSHHHRRYFPTPQPXXXXXXXXXGWGFQAL 120
                       IMV          VHHDRPSHHHRRYFPTPQP         GWGFQAL
Sbjct: 61  FAACAASSCSAEIMVLLLLQRGELLVHHDRPSHHHRRYFPTPQPVEAAAAVEVGWGFQAL 120

Query: 121 L 121
           L
Sbjct: 121 L 121



>Os11g0678600 
          Length = 175

 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 60/104 (57%), Gaps = 5/104 (4%)

Query: 22  FEVDPWRRVGGEQDLQS---GG--GAVRLSFETHHGGGVXXXXXXXXXXXXXXXXXIMVX 76
           FEVDPWRRVGGEQ+LQ+   GG  GAV LSFETHHGGGV                 IMV 
Sbjct: 64  FEVDPWRRVGGEQELQTVACGGSDGAVGLSFETHHGGGVAPSPEFAACAASSCSAEIMVL 123

Query: 77  XXXXXXXXXVHHDRPSHHHRRYFPTPQPXXXXXXXXXGWGFQAL 120
                    VHHDRPSHHHRR FPTPQP         GWGFQ L
Sbjct: 124 LLLQRGELLVHHDRPSHHHRRRFPTPQPAEAAAAVEVGWGFQVL 167



>Os08g0402700 Conserved hypothetical protein
          Length = 128

 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 22  FEVDPWRRVGGEQDLQS-----GGGAVRLSFETHHGGGVXXXXXXXXXXXXXXXXXIMVX 76
           FE+DPWRRV GEQDLQ+     G GAV LSFETHHGG V                 +MV 
Sbjct: 17  FELDPWRRVCGEQDLQTAACGGGDGAVGLSFETHHGGSVAPSPEFAACAASSCSAELMVL 76

Query: 77  XXXXXXXXXVHHDRPSHHHRRYFPTPQPXXXXXXXXXGWGFQAL 120
                    V HDRPSHHHRR FPTPQP         GWGFQ L
Sbjct: 77  LVLQRGELLVRHDRPSHHHRRRFPTPQPAEAAAAVEVGWGFQVL 120



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.141    0.500 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,966,486
Number of extensions: 131991
Number of successful extensions: 519
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 3
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)