FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0402700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.88 (0.0396) R2 : 0.396
β1 : -1.31 (0.146) R2dD : 0.115 R2D : 0.0452
β2 : 0.942 (0.109) R2dC : 0.113 R2C : 0.185
β3 : 1.23 (0.152) R2dE : 0.106 R2E : 0.149
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.344 (0.0854) R2dN8 : 0.0298 R2N8 : 0.0264
σ : 0.735
deviance : 248.99
__
_____
C
peak time of C : 18.7
E
wheather : temperature
threshold : 30.35
memory length : 733
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.47 0.724 3.76 -0.256 0.902 0.0431 -1.85 11.9 -0.337 18.8 31.3 709 -- --
242.04 0.725 3.89 -1.38 0.811 1.42 -1.43 -- -0.371 18.7 30.4 678 -- --
245.79 0.73 3.76 -0.131 0.934 -0.0672 -- 12.1 -0.347 18.7 31.3 740 -- --
248.99 0.735 3.88 -1.31 0.942 1.23 -- -- -0.344 18.7 30.35 733 -- --
280.6 0.78 3.75 -0.371 -- 0.392 -- 13.3 -0.345 -- 31.3 550 -- --
281.85 0.787 3.92 -1.14 1.26 -- -0.991 -- -0.473 18.9 -- -- -- --
284.38 0.79 3.92 -1.12 1.25 -- -- -- -0.476 18.9 -- -- -- --
272.7 0.769 3.92 -1.37 -- 1.81 -- -- -0.537 -- 29.4 576 -- --
292.82 0.797 3.85 -- 0.891 1.3 -- -- -0.232 18.7 30.6 556 -- --
366.77 0.895 3.89 -1.14 -- -- -- -- -0.5 -- -- -- -- --
317.31 0.833 3.89 -- 1.27 -- -- -- -0.351 18.8 -- -- -- --
322.78 0.837 3.88 -- -- 1.56 -- -- -0.426 -- 29.3 556 -- --
401.34 0.935 3.87 -- -- -- -- -- -0.373 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.33 temperature 30 720 > th dose independent rect. 18 20
3 234.56 temperature 30 720 > th dose independent rect. 11 3
20 234.90 temperature 30 720 > th dose dependent rect. 11 3
22 235.04 temperature 30 720 > th dose dependent rect. 17 21
25 235.18 temperature 30 720 > th dose dependent rect. 8 6
50 236.34 temperature 30 720 > th dose dependent sin 5 NA
88 236.69 wind 9 43200 > th dose dependent rect. 19 13
113 237.42 temperature 30 720 > th dose independent sin 9 NA
114 237.52 wind 9 43200 > th dose independent rect. 19 14
121 237.76 wind 7 43200 < th dose independent rect. 6 1
127 238.23 temperature 30 720 > th dose independent sin 4 NA
183 238.61 wind 7 43200 > th dose independent rect. 6 1
208 239.02 wind 9 43200 < th dose independent rect. 20 15
221 239.25 temperature 30 720 < th dose independent rect. 9 6
222 239.25 temperature 30 720 > th dose dependent no NA NA
314 239.27 atmosphere 1010 30 < th dose dependent sin 17 NA
315 239.29 wind 9 43200 < th dose independent rect. 20 13
334 239.44 atmosphere 1010 90 < th dose dependent rect. 13 10
337 239.49 humidity 90 43200 < th dose independent rect. 1 2
342 239.55 temperature 30 720 < th dose independent rect. 9 8
406 239.85 temperature 15 720 > th dose dependent rect. 6 13
437 240.08 temperature 30 720 < th dose independent rect. 9 12
443 240.13 atmosphere 1005 90 < th dose independent rect. 13 8
450 240.22 temperature 30 720 < th dose independent rect. 7 14
452 240.23 temperature 10 720 > th dose dependent sin 23 NA
478 240.39 temperature 30 720 < th dose independent rect. 9 10
479 240.40 temperature 30 720 < th dose independent rect. 9 4
510 240.68 temperature 30 720 < th dose independent rect. 7 23
521 240.83 atmosphere 1005 90 < th dose independent rect. 13 10
526 240.91 temperature 30 720 < th dose independent sin 23 NA
532 240.96 temperature 30 720 < th dose independent rect. 1 20
538 241.01 humidity 80 43200 > th dose dependent rect. 16 13
548 241.11 temperature 30 720 > th dose independent no NA NA
647 241.19 humidity 90 43200 < th dose independent rect. 21 8
649 241.21 wind 5 43200 > th dose dependent rect. 6 1
663 241.31 temperature 30 720 < th dose independent rect. 9 21
685 241.39 temperature 30 720 < th dose independent rect. 5 16
707 241.46 humidity 90 43200 > th dose independent rect. 1 2
742 241.79 temperature 30 720 < th dose independent rect. 14 23
748 241.83 humidity 70 43200 > th dose dependent rect. 10 20
750 241.85 temperature 30 720 < th dose independent no NA NA
757 241.88 humidity 90 43200 < th dose independent rect. 24 7
765 241.91 temperature 30 720 < th dose independent rect. 16 23
766 241.91 humidity 80 43200 > th dose dependent sin 13 NA
808 242.11 humidity 80 43200 > th dose dependent rect. 20 5
817 242.15 humidity 90 43200 < th dose independent rect. 10 1
865 242.33 humidity 90 43200 > th dose independent rect. 10 1
867 242.33 temperature 30 720 < th dose independent rect. 3 23
880 242.39 humidity 70 43200 > th dose dependent rect. 22 21
894 242.46 humidity 80 43200 > th dose dependent rect. 21 3
902 242.51 humidity 80 43200 > th dose dependent rect. 19 8
907 242.54 temperature 30 720 < th dose independent rect. 11 2
964 242.72 temperature 30 720 < th dose independent rect. 9 18