BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0579100 Os05g0579100|Os05g0579100
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0579100 DNA glycosylase family protein 499 e-141
Os05g0567500 DNA glycosylase family protein 251 5e-67
>Os05g0579100 DNA glycosylase family protein
Length = 323
Score = 499 bits (1284), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/274 (90%), Positives = 249/274 (90%)
Query: 50 DPNQSKKPRLTLTVPGRPLSADGEVAAAIQHLRAADPALATVIDAHDPPAFQCPHRPFHS 109
DPNQSKKPRLTLTVPGRPLSADGEVAAAIQHLRAADPALATVIDAHDPPAFQCPHRPFHS
Sbjct: 50 DPNQSKKPRLTLTVPGRPLSADGEVAAAIQHLRAADPALATVIDAHDPPAFQCPHRPFHS 109
Query: 110 LVRSILYQQLAFKAAASVYSRFLSLLGGEHNVLPEAVLALTTQDLRQIGVSPRKASYLHD 169
LVRSILYQQLAFKAAASVYSRFLSLLGGEHNVLPEAVLALTTQDLRQIGVSPRKASYLHD
Sbjct: 110 LVRSILYQQLAFKAAASVYSRFLSLLGGEHNVLPEAVLALTTQDLRQIGVSPRKASYLHD 169
Query: 170 LARKYASGILSDAAVVNMDDRSLAAMLTMVKGIGAWSVHMFMIFSLNRPDVLPAADLGVR 229
LARKYASGILSDAAVVNMDDRSLAAMLTMVKGIGAWSVHMFMIFSLNRPDVLPAADLGVR
Sbjct: 170 LARKYASGILSDAAVVNMDDRSLAAMLTMVKGIGAWSVHMFMIFSLNRPDVLPAADLGVR 229
Query: 230 KGVQHLYGLDAVPRPSQMEKLCEQWRPYRSVGAWYMWRLIESKXXXXXXXXXXXXXXLTE 289
KGVQHLYGLDAVPRPSQMEKLCEQWRPYRSVGAWYMWRLIESK LTE
Sbjct: 230 KGVQHLYGLDAVPRPSQMEKLCEQWRPYRSVGAWYMWRLIESKAPPPPPAIPVGPPALTE 289
Query: 290 HGDELMLXXXXXXXXXXXSVIQMIDPLQMLPGMG 323
HGDELML SVIQMIDPLQMLPGMG
Sbjct: 290 HGDELMLQQQQHQQQQQQSVIQMIDPLQMLPGMG 323
>Os05g0567500 DNA glycosylase family protein
Length = 290
Score = 251 bits (641), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 133/212 (62%), Positives = 163/212 (76%), Gaps = 7/212 (3%)
Query: 67 PLSADGEVAAAIQHLRAADPALATVIDAHDPPAF-QCPHRP-FHSLVRSILYQQLAFKAA 124
PLS+ GE+AAA+ HLR ADP L+ VI + PAF P RP FHSL SIL+QQLA AA
Sbjct: 59 PLSSPGELAAALSHLRTADPLLSEVISSTGAPAFISSPSRPAFHSLAHSILHQQLAPSAA 118
Query: 125 ASVYSRFLSLLGGEHNVL-----PEAVLALTTQDLRQIGVSPRKASYLHDLARKYASGIL 179
A++Y+RFL+L+ + P AVLAL+ DLR IGVS RKA+YLHDLA ++A+G L
Sbjct: 119 AAIYARFLALIPAAADPDAAVVNPAAVLALSAADLRAIGVSARKAAYLHDLAGRFAAGEL 178
Query: 180 SDAAVVNMDDRSLAAMLTMVKGIGAWSVHMFMIFSLNRPDVLPAADLGVRKGVQHLYGLD 239
S++AV MD+ +L A LT VKG+G W+VHMFMIFSL+RPDVLP+ DLGVRKGVQ LYGL
Sbjct: 179 SESAVAAMDEAALLAELTKVKGVGEWTVHMFMIFSLHRPDVLPSGDLGVRKGVQELYGLP 238
Query: 240 AVPRPSQMEKLCEQWRPYRSVGAWYMWRLIES 271
A+P+P +M LCE+WRPYRSVGAWYMWRL+ES
Sbjct: 239 ALPKPEEMAALCERWRPYRSVGAWYMWRLMES 270
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,904,946
Number of extensions: 336521
Number of successful extensions: 756
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)