Os05g0567500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA glycosylase family protein.
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Os05g0567500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA glycosylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.59 | 0.337 | 8.69 | 1.26 | 0.796 | -0.522 | -0.402 | -0.189 | 0.264 | 18.9 | 32.61 | 1158 | -- | -- |
| 51.38 | 0.334 | 8.69 | 1.28 | 0.802 | -0.557 | -0.371 | -- | 0.271 | 18.9 | 33.02 | 1070 | -- | -- |
| 51.76 | 0.335 | 8.69 | 1.23 | 0.806 | -0.511 | -- | -0.385 | 0.268 | 18.8 | 32.96 | 1082 | -- | -- |
| 51.75 | 0.335 | 8.69 | 1.29 | 0.803 | -0.557 | -- | -- | 0.27 | 18.9 | 33.1 | 1070 | -- | -- |
| 85 | 0.429 | 8.7 | 1.05 | -- | -0.38 | -- | -1.55 | 0.238 | -- | 32.2 | 1199 | -- | -- |
| 65.99 | 0.381 | 8.66 | 1.16 | 0.81 | -- | -0.296 | -- | 0.359 | 18.5 | -- | -- | -- | -- |
| 66.19 | 0.381 | 8.67 | 1.17 | 0.809 | -- | -- | -- | 0.358 | 18.5 | -- | -- | -- | -- |
| 85.09 | 0.43 | 8.67 | 1.28 | -- | -0.556 | -- | -- | 0.249 | -- | 33.05 | 1178 | -- | -- |
| 94.37 | 0.452 | 8.71 | -- | 0.792 | -0.426 | -- | -- | 0.16 | 18.8 | 33.82 | 1019 | -- | -- |
| 100.23 | 0.468 | 8.65 | 1.15 | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
| 102.26 | 0.473 | 8.69 | -- | 0.794 | -- | -- | -- | 0.228 | 18.6 | -- | -- | -- | -- |
| 126.82 | 0.524 | 8.69 | -- | -- | -0.422 | -- | -- | 0.14 | -- | 33.7 | 1093 | -- | -- |
| 135.07 | 0.542 | 8.68 | -- | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.98 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 5 | 47.24 | radiation | 1.0 | 270 | < th | dose independent | rect. | 12 | 13 |
| 13 | 47.57 | wind | 7.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 14 | 47.59 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 17 | 47.89 | wind | 5.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 20 | 48.05 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 23 | 48.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 15 |
| 25 | 48.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 30 | 48.20 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 31 | 48.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 32 | 48.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 33 | 48.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 34 | 48.28 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 36 | 48.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 37 | 48.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 38 | 48.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 39 | 48.29 | wind | 7.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 41 | 48.31 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 69 | 48.97 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 86 | 49.13 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 87 | 49.13 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 91 | 49.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 6 |
| 93 | 49.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 94 | 49.19 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 95 | 49.19 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 98 | 49.22 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 99 | 49.23 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 101 | 49.24 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 102 | 49.24 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 103 | 49.24 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 105 | 49.24 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 106 | 49.24 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 111 | 49.24 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 112 | 49.24 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 113 | 49.24 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 114 | 49.24 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 119 | 49.24 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 120 | 49.27 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 135 | 49.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 138 | 49.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 141 | 49.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 142 | 49.42 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 144 | 49.42 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 147 | 49.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 148 | 49.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 150 | 49.43 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 158 | 49.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 160 | 49.45 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 161 | 49.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 164 | 49.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 165 | 49.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 166 | 49.45 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 173 | 49.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 178 | 49.47 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 179 | 49.48 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 2 |
| 180 | 49.48 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 183 | 49.48 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 187 | 49.49 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 188 | 49.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 16 |
| 207 | 49.64 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 208 | 49.68 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 212 | 49.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 216 | 49.74 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 222 | 49.79 | wind | 7.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 224 | 49.80 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 229 | 49.84 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 249 | 49.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 251 | 49.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 18 |
| 252 | 49.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 18 |
| 254 | 49.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 255 | 49.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 262 | 49.97 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 264 | 49.97 | wind | 5.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 267 | 49.99 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 8 |
| 296 | 50.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 299 | 50.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 301 | 50.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 306 | 50.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 307 | 50.12 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 311 | 50.12 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 317 | 50.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 318 | 50.12 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 326 | 50.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 336 | 50.15 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 341 | 50.16 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 352 | 50.19 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 357 | 50.20 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 367 | 50.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 408 | 50.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 6 |
| 411 | 50.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 465 | 50.43 | radiation | 1.0 | 270 | < th | dose dependent | sin | 17 | NA |
| 468 | 50.44 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 513 | 50.56 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 524 | 50.58 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 5 |
| 525 | 50.58 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 602 | 50.71 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 688 | 50.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 711 | 50.96 | temperature | 25.0 | 10 | < th | dose independent | rect. | 18 | 9 |
| 716 | 50.98 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 3 | 5 |
| 723 | 50.98 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 725 | 50.99 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 729 | 51.00 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 758 | 51.02 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 766 | 51.04 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 792 | 51.11 | wind | 3.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 798 | 51.11 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 2 | 7 |
| 800 | 51.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 809 | 51.14 | radiation | 1.0 | 270 | < th | dose independent | sin | 16 | NA |
| 814 | 51.15 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 5 |
| 815 | 51.15 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 907 | 51.33 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 5 |
| 913 | 51.33 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 919 | 51.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 926 | 51.37 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 15 |
| 951 | 51.40 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 966 | 51.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 970 | 51.42 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 971 | 51.42 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 18 |
| 974 | 51.42 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 18 |