BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0567500 Os05g0567500|AK121133
(290 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0567500 DNA glycosylase family protein 313 7e-86
Os05g0579100 DNA glycosylase family protein 186 2e-47
>Os05g0567500 DNA glycosylase family protein
Length = 290
Score = 313 bits (803), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 171/263 (65%), Positives = 171/263 (65%)
Query: 28 KISFRSRKIVKSTPAKGKSVAXXXXXXXXXXXXXXXXXXXXXXXHLRTADPLLSEVISST 87
KISFRSRKIVKSTPAKGKSVA HLRTADPLLSEVISST
Sbjct: 28 KISFRSRKIVKSTPAKGKSVATTTTAVLSPPPLSSPGELAAALSHLRTADPLLSEVISST 87
Query: 88 GAPAFISSPSRPAFHSLAHSILHQQLAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 147
GAPAFISSPSRPAFHSLAHSILHQQLAPS
Sbjct: 88 GAPAFISSPSRPAFHSLAHSILHQQLAPSAAAAIYARFLALIPAAADPDAAVVNPAAVLA 147
Query: 148 XXXXXXXXIGVSARKAAYLHDLAGRFAAGELSXXXXXXXXXXXXXXXXTKVKGVGEWTVH 207
IGVSARKAAYLHDLAGRFAAGELS TKVKGVGEWTVH
Sbjct: 148 LSAADLRAIGVSARKAAYLHDLAGRFAAGELSESAVAAMDEAALLAELTKVKGVGEWTVH 207
Query: 208 MFMIFSLHRPDVLPSGDLGVRKGVQELYGLPALPKPEEMAALCERWRPYRSVGAWYMWRL 267
MFMIFSLHRPDVLPSGDLGVRKGVQELYGLPALPKPEEMAALCERWRPYRSVGAWYMWRL
Sbjct: 208 MFMIFSLHRPDVLPSGDLGVRKGVQELYGLPALPKPEEMAALCERWRPYRSVGAWYMWRL 267
Query: 268 MESXXXXXXXXXXXXXXTLPSSC 290
MES TLPSSC
Sbjct: 268 MESKGAAAKKAKSNAIATLPSSC 290
>Os05g0579100 DNA glycosylase family protein
Length = 323
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 117/199 (58%), Gaps = 7/199 (3%)
Query: 72 HLRTADPLLSEVISSTGAPAFISSPSRPAFHSLAHSILHQQLAPSXXXXXXXXXXXXXXX 131
HLR ADP L+ VI + PAF P RP FHSL SIL+QQLA
Sbjct: 80 HLRAADPALATVIDAHDPPAF-QCPHRP-FHSLVRSILYQQLA-----FKAAASVYSRFL 132
Query: 132 XXXXXXXXXXXXXXXXXXXXXXXXIGVSARKAAYLHDLAGRFAAGELSXXXXXXXXXXXX 191
IGVS RKA+YLHDLA ++A+G LS
Sbjct: 133 SLLGGEHNVLPEAVLALTTQDLRQIGVSPRKASYLHDLARKYASGILSDAAVVNMDDRSL 192
Query: 192 XXXXTKVKGVGEWTVHMFMIFSLHRPDVLPSGDLGVRKGVQELYGLPALPKPEEMAALCE 251
T VKG+G W+VHMFMIFSL+RPDVLP+ DLGVRKGVQ LYGL A+P+P +M LCE
Sbjct: 193 AAMLTMVKGIGAWSVHMFMIFSLNRPDVLPAADLGVRKGVQHLYGLDAVPRPSQMEKLCE 252
Query: 252 RWRPYRSVGAWYMWRLMES 270
+WRPYRSVGAWYMWRL+ES
Sbjct: 253 QWRPYRSVGAWYMWRLIES 271
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,259,834
Number of extensions: 197643
Number of successful extensions: 626
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 3
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)