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Os05g0579100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA glycosylase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0165) R2 : 0.00219
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0347 (0.0347) R2dN8 : 0.00283 R2N8 : 0.00219
σ : 0.31
deviance : 44.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.23 0.222 11.8 0.174 0.332 0.763 -0.213 0.289 -0.0267 10.2 10.88 7 -- --
22.28 0.222 11.8 0.133 0.331 0.774 -0.158 -- -0.0375 10.2 10.88 7 -- --
22.37 0.22 11.8 0.139 0.333 0.767 -- 0.0985 -0.0346 10.2 14.26 5 -- --
22.38 0.22 11.8 0.125 0.333 0.768 -- -- -0.0382 10.2 11.02 5 -- --
28.38 0.249 11.8 0.09 -- 0.99 -- 0.0522 -0.0652 -- 14.26 5 -- --
27.98 0.248 11.8 0.278 0.476 -- -0.102 -- 0.0699 11.8 -- -- -- --
28.03 0.248 11.8 0.274 0.476 -- -- -- 0.0695 11.8 -- -- -- --
28.35 0.248 11.8 0.0816 -- 0.984 -- -- -0.0682 -- 10.41 2 -- --
22.75 0.222 11.8 -- 0.324 0.829 -- -- -0.0594 9.98 10.61 5 -- --
42.31 0.304 11.8 0.26 -- -- -- -- 0.0636 -- -- -- -- --
30.01 0.256 11.8 -- 0.473 -- -- -- 0.039 11.7 -- -- -- --
28.51 0.249 11.8 -- -- 1.01 -- -- -0.0801 -- 9.36 2 -- --
44.1 0.31 11.8 -- -- -- -- -- 0.0347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.51 temperature 15 10 > th dose dependent rect. 3 23
8 22.09 temperature 30 10 < th dose dependent rect. 9 23
11 22.22 temperature 30 10 < th dose dependent rect. 21 23
12 22.22 temperature 30 90 < th dose dependent rect. 23 23
16 22.24 temperature 30 10 < th dose dependent rect. 13 23
17 22.25 temperature 10 10 > th dose dependent no NA NA
20 22.27 temperature 30 10 < th dose dependent rect. 17 23
21 22.28 wind 5 4320 < th dose independent rect. 20 2
22 22.28 temperature 30 10 < th dose dependent no NA NA
23 22.28 temperature 30 10 < th dose dependent rect. 15 23
25 22.30 wind 5 4320 > th dose dependent rect. 20 7
27 22.31 wind 5 4320 > th dose independent rect. 20 2
32 22.34 temperature 30 10 < th dose dependent rect. 11 23
34 22.36 temperature 30 10 < th dose dependent rect. 1 23
51 22.43 temperature 30 10 < th dose dependent rect. 24 20
72 22.60 temperature 30 10 < th dose dependent rect. 19 23
73 22.60 temperature 30 10 < th dose dependent rect. 23 23
75 22.61 temperature 30 10 < th dose dependent rect. 7 23
79 22.63 wind 7 4320 < th dose independent rect. 19 9
80 22.63 temperature 25 10 < th dose dependent sin 23 NA
86 22.66 temperature 15 90 > th dose dependent rect. 18 23
87 22.66 temperature 15 10 > th dose dependent rect. 23 23
91 22.68 wind 5 4320 > th dose dependent rect. 21 1
95 22.69 wind 7 4320 < th dose independent rect. 20 7
103 22.72 wind 7 4320 > th dose independent rect. 18 10
111 22.74 temperature 20 10 > th dose dependent rect. 1 23
121 22.77 temperature 20 10 > th dose dependent rect. 7 23
126 22.79 wind 7 4320 > th dose independent rect. 20 7
143 22.83 temperature 30 30 < th dose dependent rect. 5 23
188 22.95 temperature 20 1440 > th dose independent rect. 18 11
190 22.95 temperature 20 1440 > th dose independent rect. 9 21
206 22.98 temperature 20 1440 > th dose independent rect. 18 18
213 22.99 temperature 25 1440 < th dose dependent rect. 21 1
215 22.99 temperature 20 10 > th dose dependent rect. 8 16
237 23.01 temperature 20 4320 > th dose independent rect. 20 3
273 23.04 temperature 20 1440 > th dose independent sin 13 NA
282 23.04 temperature 25 1440 < th dose dependent rect. 17 9
283 23.04 temperature 25 1440 < th dose dependent rect. 10 16
300 23.06 temperature 20 1440 < th dose independent rect. 18 11
324 23.07 temperature 20 1440 < th dose independent rect. 9 21
331 23.08 temperature 20 4320 > th dose independent rect. 18 6
337 23.08 temperature 20 720 > th dose independent rect. 3 21
346 23.08 temperature 25 1440 < th dose dependent rect. 20 6
383 23.10 temperature 20 1440 > th dose independent no NA NA
394 23.10 temperature 20 1440 < th dose independent rect. 18 18
405 23.10 temperature 20 10 > th dose dependent rect. 13 23
440 23.12 temperature 20 1440 > th dose independent rect. 5 23
445 23.12 temperature 25 1440 < th dose dependent sin 16 NA
527 23.15 temperature 25 1440 < th dose dependent rect. 17 19
537 23.16 temperature 20 1440 < th dose independent sin 12 NA
574 23.17 temperature 20 4320 < th dose independent rect. 20 3
596 23.17 temperature 10 270 > th dose dependent rect. 16 23
603 23.18 temperature 20 4320 > th dose independent rect. 13 11
656 23.19 temperature 25 1440 < th dose dependent rect. 20 16
673 23.20 temperature 20 4320 > th dose independent rect. 15 9
686 23.20 temperature 20 1440 < th dose independent rect. 1 23
691 23.20 temperature 25 1440 < th dose dependent no NA NA
702 23.20 temperature 10 720 > th dose dependent rect. 18 21
739 23.21 temperature 25 1440 < th dose dependent rect. 20 22
746 23.22 temperature 20 1440 < th dose independent no NA NA
768 23.22 temperature 25 1440 < th dose dependent rect. 1 23
910 23.27 temperature 10 1440 > th dose dependent rect. 21 5