BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0579100 Os05g0579100|Os05g0579100
(323 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19480.1 | chr1:6744520-6746144 FORWARD LENGTH=383 308 3e-84
AT1G75230.2 | chr1:28234444-28235628 FORWARD LENGTH=395 306 7e-84
AT3G50880.1 | chr3:18913509-18914330 FORWARD LENGTH=274 273 9e-74
>AT1G19480.1 | chr1:6744520-6746144 FORWARD LENGTH=383
Length = 382
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 146/215 (67%), Positives = 175/215 (81%), Gaps = 3/215 (1%)
Query: 61 LTVP---GRPLSADGEVAAAIQHLRAADPALATVIDAHDPPAFQCPHRPFHSLVRSILYQ 117
+TVP RPL+ +GE+ AI +LR ADP LA +ID H PP F+ PF +L+R+ILYQ
Sbjct: 123 ITVPRIQARPLTCEGELETAIHYLRNADPLLAALIDVHPPPTFESFKTPFLALIRNILYQ 182
Query: 118 QLAFKAAASVYSRFLSLLGGEHNVLPEAVLALTTQDLRQIGVSPRKASYLHDLARKYASG 177
QLA KA S+Y+RF+SL GGE+ V+PE VL+L Q LRQIGVS RKASYLHDLARKY +G
Sbjct: 183 QLAMKAGNSIYTRFVSLCGGENLVVPETVLSLNPQQLRQIGVSGRKASYLHDLARKYQNG 242
Query: 178 ILSDAAVVNMDDRSLAAMLTMVKGIGAWSVHMFMIFSLNRPDVLPAADLGVRKGVQHLYG 237
ILSD+A++NMD++SL MLTMV GIG+WSVHMFMI SL+RPDVLP DLGVRKGVQ LYG
Sbjct: 243 ILSDSAILNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHRPDVLPVNDLGVRKGVQLLYG 302
Query: 238 LDAVPRPSQMEKLCEQWRPYRSVGAWYMWRLIESK 272
LD +PRPSQME+ C +WRPYRSVG+WYMWRLIE+K
Sbjct: 303 LDDLPRPSQMEQHCAKWRPYRSVGSWYMWRLIEAK 337
>AT1G75230.2 | chr1:28234444-28235628 FORWARD LENGTH=395
Length = 394
Score = 306 bits (785), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 144/216 (66%), Positives = 176/216 (81%), Gaps = 3/216 (1%)
Query: 60 TLTVP---GRPLSADGEVAAAIQHLRAADPALATVIDAHDPPAFQCPHRPFHSLVRSILY 116
T+TVP R L+ +GE+ AA+ HLR+ DP LA++ID H PP F+ PF +L+RSILY
Sbjct: 118 TVTVPRIQARSLTCEGELEAALHHLRSVDPLLASLIDIHPPPTFETFQTPFLALIRSILY 177
Query: 117 QQLAFKAAASVYSRFLSLLGGEHNVLPEAVLALTTQDLRQIGVSPRKASYLHDLARKYAS 176
QQLA KA S+Y+RF++L GGE+ V+PE VL LT Q LRQIGVS RKASYLHDLARKY +
Sbjct: 178 QQLAAKAGNSIYTRFVALCGGENGVVPENVLPLTPQQLRQIGVSGRKASYLHDLARKYQN 237
Query: 177 GILSDAAVVNMDDRSLAAMLTMVKGIGAWSVHMFMIFSLNRPDVLPAADLGVRKGVQHLY 236
GILSD+ +VNMD++SL MLTMV GIG+WSVHMFMI SL+RPDVLP DLGVRKGVQ L
Sbjct: 238 GILSDSGIVNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHRPDVLPVNDLGVRKGVQMLN 297
Query: 237 GLDAVPRPSQMEKLCEQWRPYRSVGAWYMWRLIESK 272
G++ +PRPS+ME+LCE+WRPYRSV +WY+WRLIESK
Sbjct: 298 GMEDLPRPSKMEQLCEKWRPYRSVASWYLWRLIESK 333
>AT3G50880.1 | chr3:18913509-18914330 FORWARD LENGTH=274
Length = 273
Score = 273 bits (698), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 133/218 (61%), Positives = 163/218 (74%), Gaps = 3/218 (1%)
Query: 57 PRLTLTVPGRPLSADGEVAAAIQHLRAADPALATVIDAH-DPPAFQCPHRPFHSLVRSIL 115
PR+ +T PLS V A++HL+++D L +I H DPP F + PF SL RSIL
Sbjct: 54 PRIIITA-SPPLSTKSTVDIALRHLQSSDELLGALITTHNDPPLFDSSNTPFLSLARSIL 112
Query: 116 YQQLAFKAAASVYSRFLSLL-GGEHNVLPEAVLALTTQDLRQIGVSPRKASYLHDLARKY 174
YQQLA KAA +Y RF+SL GGE V+PE+V++L+ DLR+IGVS RKASYLHDLA KY
Sbjct: 113 YQQLATKAAKCIYDRFISLFNGGEAGVVPESVISLSAVDLRKIGVSGRKASYLHDLADKY 172
Query: 175 ASGILSDAAVVNMDDRSLAAMLTMVKGIGAWSVHMFMIFSLNRPDVLPAADLGVRKGVQH 234
+G+LSD ++ M D L LT+VKGIG W+VHMFMIFSL+RPDVLP DLGVRKGV+
Sbjct: 173 NNGVLSDELILKMSDEELIDRLTLVKGIGVWTVHMFMIFSLHRPDVLPVGDLGVRKGVKD 232
Query: 235 LYGLDAVPRPSQMEKLCEQWRPYRSVGAWYMWRLIESK 272
LYGL +P P QME+LCE+WRPYRSVG+WYMWRLIES+
Sbjct: 233 LYGLKNLPGPLQMEQLCEKWRPYRSVGSWYMWRLIESR 270
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,201,429
Number of extensions: 180765
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 3
Length of query: 323
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,392,385
Effective search space: 1879894240
Effective search space used: 1879894240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)