BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0576600 Os05g0576600|AK107732
         (176 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0576600  Conserved hypothetical protein                      285   1e-77
Os01g0644900  Conserved hypothetical protein                       83   8e-17

>Os05g0576600 Conserved hypothetical protein
          Length = 176

 Score =  285 bits (729), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/176 (82%), Positives = 146/176 (82%)

Query: 1   MEVEAFPIRFTRGIRSHWGRRKYQRLEAANGGGKTRATQQXXXXXXXXXXXXXXXXXXXX 60
           MEVEAFPIRFTRGIRSHWGRRKYQRLEAANGGGKTRATQQ                    
Sbjct: 1   MEVEAFPIRFTRGIRSHWGRRKYQRLEAANGGGKTRATQQLGGARRGGAGWGLRLRRLLR 60

Query: 61  XXXXXXXXXXSSPARLLARIRDAYVGGMLAVSRKASGMSLPNAPEGLWPRRVPRRKQLPA 120
                     SSPARLLARIRDAYVGGMLAVSRKASGMSLPNAPEGLWPRRVPRRKQLPA
Sbjct: 61  VRVRVARAWLSSPARLLARIRDAYVGGMLAVSRKASGMSLPNAPEGLWPRRVPRRKQLPA 120

Query: 121 ARPGQLTDFEQRLVVEIYKSIVASKELTTMLHHSTAHLPQQHNTAAPASSGQLLVN 176
           ARPGQLTDFEQRLVVEIYKSIVASKELTTMLHHSTAHLPQQHNTAAPASSGQLLVN
Sbjct: 121 ARPGQLTDFEQRLVVEIYKSIVASKELTTMLHHSTAHLPQQHNTAAPASSGQLLVN 176



>Os01g0644900 Conserved hypothetical protein
          Length = 176

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 16/170 (9%)

Query: 4   EAFPIRFTRGIRSHWGRRKYQRLEAANGGGKT---------RATQQXXXXXXXXXXXXXX 54
           EAFPI FT+GIRS+W  RKY  ++++  G  T           +                
Sbjct: 7   EAFPIGFTKGIRSYWRSRKYHSVDSSAAGRGTSNLVRLGGGSGSGSDGGAWAVRLGGMFR 66

Query: 55  XXXXXXXXXXXXXXXXSSPARLLARIRDAYVGGMLAVSRK--ASGMSLPNA--PEGLWPR 110
                             PAR+L R+RDAYV  M+ V++K  A+ +S P A   E LW +
Sbjct: 67  TRVKAAAPAATTTAVAKVPARVLGRVRDAYVDAMVGVAKKQAAAALSQPGAGTTEALWQK 126

Query: 111 RVPRRKQLPAARP---GQLTDFEQRLVVEIYKSIVASKELTTMLHHSTAH 157
           RVP R+    ++     +  +  QRLV+E+YKS++AS++L++ML  S A 
Sbjct: 127 RVPVRRSRGQSKKQLRQKADELGQRLVMEMYKSVLASRDLSSMLQASRAQ 176



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,144,759
Number of extensions: 174435
Number of successful extensions: 552
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 82
Effective length of database: 12,127,685
Effective search space: 994470170
Effective search space used: 994470170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)