BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0569900 Os05g0569900|AK069714
         (288 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0569900  Conserved hypothetical protein                      546   e-156
Os02g0633100  Conserved hypothetical protein                      349   2e-96

>Os05g0569900 Conserved hypothetical protein
          Length = 288

 Score =  546 bits (1407), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/288 (92%), Positives = 267/288 (92%)

Query: 1   MDALVSAALEEVSARLSAGIPVTDXXXXXXXXXXXXXXPIGPAVKRAVWARLIVLPVISV 60
           MDALVSAALEEVSARLSAGIPVTD              PIGPAVKRAVWARLIVLPVISV
Sbjct: 1   MDALVSAALEEVSARLSAGIPVTDLWAALRGALEAAGLPIGPAVKRAVWARLIVLPVISV 60

Query: 61  VLGXXXXXXXGPVVDDPKVGVEDAERLGMRLVASAALRDNFLGMYDLRHSKSEMSAVQKK 120
           VLG       GPVVDDPKVGVEDAERLGMRLVASAALRDNFLGMYDLRHSKSEMSAVQKK
Sbjct: 61  VLGEAEAEAEGPVVDDPKVGVEDAERLGMRLVASAALRDNFLGMYDLRHSKSEMSAVQKK 120

Query: 121 ALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRSTIIKFKGNGAEKED 180
           ALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRSTIIKFKGNGAEKED
Sbjct: 121 ALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRSTIIKFKGNGAEKED 180

Query: 181 ASQNKRVTNTNSLYLTRYAKDCMNSHQRIEIIKPGLLVSNEETNIDDLQDGTFGVNSDND 240
           ASQNKRVTNTNSLYLTRYAKDCMNSHQRIEIIKPGLLVSNEETNIDDLQDGTFGVNSDND
Sbjct: 181 ASQNKRVTNTNSLYLTRYAKDCMNSHQRIEIIKPGLLVSNEETNIDDLQDGTFGVNSDND 240

Query: 241 VSIHDYLPAMKAICDKLEEASGRVNCSVHLFGVLFHFSSFLTFSNYFL 288
           VSIHDYLPAMKAICDKLEEASGRVNCSVHLFGVLFHFSSFLTFSNYFL
Sbjct: 241 VSIHDYLPAMKAICDKLEEASGRVNCSVHLFGVLFHFSSFLTFSNYFL 288



>Os02g0633100 Conserved hypothetical protein
          Length = 1820

 Score =  349 bits (895), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 184/266 (69%), Positives = 208/266 (78%), Gaps = 6/266 (2%)

Query: 1   MDALVSAALEEVSARLSAGIPVTDXXXXXXXXXXXXXXPIGPAVKRAVWARLIVLPVISV 60
           MDALVSAALEEV ARLS G+PVTD                G   KR +WARLI LP+IS+
Sbjct: 1   MDALVSAALEEVCARLSPGLPVTDLWPALRGALEAAGLSPGLDAKRVLWARLIALPIISL 60

Query: 61  VLGXXXXXXXGPVVDDPKVGVEDAERLGMRLVASAALRDNFLGMYDLRHSKSEMSAVQKK 120
           V+G        PV  D    VE+AER G+RLVASAALRDNFLGMYD R +KSE+SAVQK 
Sbjct: 61  VVGEGDGAPVDPVEKD----VEEAERRGVRLVASAALRDNFLGMYDRRFAKSELSAVQKG 116

Query: 121 ALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRSTIIKFKGNGAEKED 180
           AL+RVGASRTSGVTQNDLCK+F M+GNNFH+IV+SLQSQKLIVR+STIIK K +GA+ ED
Sbjct: 117 ALERVGASRTSGVTQNDLCKTFRMKGNNFHFIVKSLQSQKLIVRQSTIIKVKDHGADAED 176

Query: 181 ASQNKRVTNTNSLYLTRYAKDC-MNSHQRIEIIKPGLLVSNEETNIDDLQ-DGTFGVNSD 238
           ASQNK++ NTNSLYL+RYAK+  MNS QRIEIIKP LL SNEE+N D LQ DG FGVN  
Sbjct: 177 ASQNKQIINTNSLYLSRYAKNLNMNSQQRIEIIKPELLGSNEESNGDVLQEDGAFGVNDK 236

Query: 239 NDVSIHDYLPAMKAICDKLEEASGRV 264
           ND+SIHDYLPAMKAICDKLEEASG+ 
Sbjct: 237 NDISIHDYLPAMKAICDKLEEASGKT 262



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,963,428
Number of extensions: 291075
Number of successful extensions: 677
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 2
Length of query: 288
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 188
Effective length of database: 11,814,401
Effective search space: 2221107388
Effective search space used: 2221107388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)