BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0569500 Os05g0569500|AF049892
(238 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0569500 Protein of unknown function DUF1264 family pro... 466 e-132
AK111221 178 4e-45
Os01g0728700 Protein of unknown function DUF1264 family pro... 168 2e-42
Os01g0749000 Protein of unknown function DUF1264 family pro... 165 3e-41
>Os05g0569500 Protein of unknown function DUF1264 family protein
Length = 238
Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/238 (94%), Positives = 225/238 (94%)
Query: 1 MAASCHEVEVPGKPXXXXXXXXXXXXXSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHH 60
MAASCHEVEVPGKP SIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHH
Sbjct: 1 MAASCHEVEVPGKPTETGTALLEAATGSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHH 60
Query: 61 FCAHLNEDMRQCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLF 120
FCAHLNEDMRQCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLF
Sbjct: 61 FCAHLNEDMRQCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLF 120
Query: 121 MPGVPGVVERRDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQLRQELAKCV 180
MPGVPGVVERRDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQLRQELAKCV
Sbjct: 121 MPGVPGVVERRDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQLRQELAKCV 180
Query: 181 EEKFSVSFDKERENRAYMSGPDHGIHPLANAAGKGLKTDLREVDLPAMTTAHAGRVFT 238
EEKFSVSFDKERENRAYMSGPDHGIHPLANAAGKGLKTDLREVDLPAMTTAHAGRVFT
Sbjct: 181 EEKFSVSFDKERENRAYMSGPDHGIHPLANAAGKGLKTDLREVDLPAMTTAHAGRVFT 238
>AK111221
Length = 229
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 12/220 (5%)
Query: 3 ASCHEVEVPGKPXXXXXXXXXXXXXSIQGFGPVNQIHQHLCAFHFYADDMTR-QVEAHHF 61
+SC +V G+P ++Q F PV +I HL AFH YA D R VEA+H+
Sbjct: 2 SSCETHKVAGEPESAMNKALETGAAAVQNFAPVKRICAHLNAFHAYAHDPMRPAVEANHY 61
Query: 62 CAHLNEDMRQCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLFM 121
C+HLNED+RQC+++D P+ AR+IG+EY++ L+ L ++E+ LWH+H FEVK G+L M
Sbjct: 62 CSHLNEDVRQCILYDSPEPPARIIGIEYMITTRLYNNLDEEEQKLWHSHVFEVKSGMLIM 121
Query: 122 PGVPGV-------VERRDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQLR- 173
P + E +++E V YGK H WQ DRGD LPLG PQ+M + T GQ+
Sbjct: 122 PKPAAMPEAAWEAAENKEMEEVIHLYGKIYHLWQTDRGDTLPLGAPQLMTSYTEAGQMPN 181
Query: 174 -QELAKCVEEKFSVSFDKERENRAYMSGPDHGIHPLANAA 212
+E K + +F F ++++ R Y+ P IH A+AA
Sbjct: 182 FEEKVKERDARFGSDFQRKKQAREYIKEP--VIHKNADAA 219
>Os01g0728700 Protein of unknown function DUF1264 family protein
Length = 250
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 8/226 (3%)
Query: 7 EVEVPGKPXXXXXXXXXXXXXSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHHFCAHLN 66
V PG+ ++Q PV Q+ QH C+F YA D++RQVE HHF + LN
Sbjct: 19 SVPPPGRATTVSSQLLDMGAQAVQALKPVRQMKQHACSFALYAHDLSRQVEVHHFVSRLN 78
Query: 67 EDMRQCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLFMPGVPG 126
+D+ QC ++D ARLIGVEYIV++ +F +LP +E+ LWH+H +EVK G+ GVP
Sbjct: 79 QDVLQCAVYDSDKPSARLIGVEYIVSDAIFESLPPEEQKLWHSHAYEVKAGLWTDVGVPE 138
Query: 127 VVERRDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMA--LTRDGQLRQELAKCVEEKF 184
++ ++ R+ KTYGK WQVDRGDALPLG P +M++ G++R EL +E++
Sbjct: 139 PLQSSEMARMAKTYGKLWCTWQVDRGDALPLGAPALMVSPQAVEPGRVRAELVHGRDERY 198
Query: 185 SVSFDKE--RENRAYMSGPDHGIHPLANAA---GKGLKTDLREVDL 225
+ + + R M P+ I+P A+ GKG D+ ++
Sbjct: 199 KIDSSAQGLKGARVEMDEPE-WINPNADYWRLHGKGFAIDVTATEM 243
>Os01g0749000 Protein of unknown function DUF1264 family protein
Length = 252
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 116/193 (60%), Gaps = 2/193 (1%)
Query: 11 PGKPXXXXXXXXXXXXXSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHHFCAHLNEDMR 70
PG+P +Q PV I QH+C F YA D RQVE HHF + LN+D+
Sbjct: 26 PGRPTTVDSMLLDKGAAMLQALRPVKHIKQHVCTFALYAHDPRRQVETHHFVSRLNQDVL 85
Query: 71 QCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLFMPGVPGVVER 130
QC ++D D ARLIGVEYIV+ +F +LP +E+ LWH+H E+K G+ P VPG++E+
Sbjct: 86 QCAVYDADDKHARLIGVEYIVSRKIFDSLPAEEQRLWHSHAHEIKAGLWVSPHVPGMLEK 145
Query: 131 RDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMALTRD--GQLRQELAKCVEEKFSVSF 188
+LE++ T+GK WQVDRGD LPLG P +M++ D +R +L + ++K+ S
Sbjct: 146 AELEKMAGTFGKFWCTWQVDRGDRLPLGAPALMVSPQDDPAADVRPDLVRNRDDKYRYST 205
Query: 189 DKERENRAYMSGP 201
+ R RA ++ P
Sbjct: 206 TELRAARADVAVP 218
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,459,791
Number of extensions: 361772
Number of successful extensions: 566
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 4
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)