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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0569500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1264 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0327) R2 : 0.46
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.71 (0.157) R2dC : 1.37 R2C : -1.01
β3 : -2.41 (0.137) R2dE : 1.42 R2E : -0.959
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.366 (0.069) R2dN8 : 0.0428 R2N8 : 0.0535
σ : 0.614
deviance : 172.11
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_____
C
peak time of C : 2.31
E
wheather : radiation
threshold : 4.91
memory length : 3
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.02
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.73 0.61 3.39 -0.485 2.62 -2.31 -2.77 2.34 0.33 2.34 2.244 9 4.1 --
168.92 0.61 3.38 -0.356 2.67 -2.36 -0.281 -- 0.328 2.45 4.848 3 3.82 --
169.08 0.61 3.39 -0.351 2.79 -2.5 -- 0.0684 0.327 2.14 5.04 3 4.3 --
168.89 0.609 3.38 -0.35 2.73 -2.42 -- -- 0.327 2.31 4.91 3 4.02 --
287.74 0.794 3.35 -0.287 -- -0.409 -- 0.127 0.434 -- 5.04 3 4.3 --
235.14 0.719 3.33 -0.308 1.11 -- -0.875 -- 0.418 6.73 -- -- -- --
237.08 0.721 3.33 -0.322 1.11 -- -- -- 0.421 6.76 -- -- -- --
281.68 0.785 3.35 -0.306 -- -0.484 -- -- 0.434 -- 1.799 6 5.91 --
172.11 0.614 3.38 -- 2.71 -2.41 -- -- 0.366 2.31 4.91 3 4.02 --
301.13 0.811 3.35 -0.297 -- -- -- -- 0.442 -- -- -- -- --
239.82 0.724 3.32 -- 1.1 -- -- -- 0.456 6.78 -- -- -- --
271.78 0.768 3.35 -- -- -0.769 -- -- 0.456 -- 14.66 2 10.9 --
303.46 0.813 3.34 -- -- -- -- -- 0.475 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.60 radiation 1.0 10 > th dose dependent rect. 18 13
2 167.09 radiation 1.0 10 > th dose dependent rect. 5 2
13 167.61 temperature 15.0 10 > th dose dependent rect. 5 2
15 168.79 wind 1.0 90 > th dose independent rect. 7 22
16 168.93 wind 3.0 10 < th dose independent rect. 5 4
19 169.31 radiation 1.0 10 > th dose independent rect. 5 2
31 170.46 wind 5.0 10 < th dose dependent rect. 5 4
33 170.94 wind 3.0 10 < th dose independent rect. 5 2
36 171.47 radiation 1.0 10 < th dose independent sin 10 NA
37 171.52 radiation 1.0 10 > th dose independent sin 10 NA
38 171.67 wind 5.0 10 < th dose dependent rect. 5 2
39 171.74 temperature 20.0 10 > th dose independent rect. 5 2
55 172.30 humidity 80.0 30 > th dose independent rect. 5 3
57 172.40 radiation 1.0 10 < th dose dependent sin 10 NA
62 172.79 humidity 50.0 10 > th dose dependent rect. 5 4
74 173.69 radiation 40.0 10 < th dose dependent rect. 5 4
82 174.06 radiation 20.0 10 < th dose independent rect. 5 4
114 175.33 humidity 70.0 90 > th dose dependent rect. 5 2
125 175.54 wind 9.0 10 < th dose independent rect. 7 22
148 176.01 precipitation 0.1 10 < th dose independent rect. 5 2
149 176.01 precipitation 0.1 10 < th dose dependent rect. 5 2
159 176.44 temperature 10.0 10 > th dose independent rect. 5 2
161 176.44 temperature 30.0 10 < th dose independent rect. 5 2
162 176.44 humidity 50.0 10 > th dose independent rect. 5 2
165 176.44 atmosphere 995.0 10 > th dose independent rect. 5 2
166 176.44 atmosphere 1015.0 10 < th dose independent rect. 5 2
170 176.44 temperature 10.0 10 > th dose independent rect. 7 22
171 176.46 atmosphere 995.0 10 > th dose dependent rect. 5 2
213 177.29 radiation 20.0 90 < th dose independent rect. 5 2
265 178.26 atmosphere 995.0 10 > th dose independent rect. 7 22
282 178.59 precipitation 0.1 10 < th dose independent rect. 7 22
284 178.59 precipitation 0.1 10 < th dose dependent rect. 7 22
290 178.79 atmosphere 1005.0 10 > th dose independent rect. 5 2
298 178.91 radiation 40.0 90 < th dose dependent rect. 5 2
502 184.41 humidity 50.0 30 > th dose independent rect. 7 22
506 184.50 atmosphere 1015.0 90 < th dose dependent rect. 5 2
526 185.03 humidity 50.0 10 > th dose dependent rect. 18 11
527 185.05 atmosphere 1015.0 10 < th dose independent rect. 7 22
532 185.14 humidity 50.0 10 > th dose independent rect. 9 20
700 188.12 precipitation 0.1 10 < th dose independent rect. 5 15
703 188.12 precipitation 0.1 10 < th dose dependent rect. 5 15
708 188.17 humidity 70.0 10 > th dose independent rect. 18 11
715 188.26 radiation 10.0 10 < th dose dependent rect. 18 11
716 188.27 temperature 30.0 10 < th dose independent rect. 18 11
723 188.41 humidity 50.0 10 > th dose dependent rect. 5 13
725 188.42 radiation 1.0 10 < th dose independent rect. 18 11
737 188.58 wind 9.0 10 < th dose independent rect. 18 11
738 188.59 wind 9.0 10 < th dose independent rect. 20 9
740 188.63 temperature 10.0 10 > th dose independent rect. 20 9
741 188.63 temperature 30.0 10 < th dose independent rect. 20 9
742 188.63 humidity 50.0 10 > th dose independent rect. 20 9
745 188.63 atmosphere 995.0 10 > th dose independent rect. 20 9
746 188.63 radiation 1.0 10 < th dose independent rect. 20 9
751 188.63 temperature 10.0 10 > th dose independent rect. 5 15
753 188.63 atmosphere 1015.0 10 < th dose independent rect. 5 15
757 188.65 radiation 30.0 10 < th dose dependent rect. 20 9
765 188.72 precipitation 0.1 10 < th dose independent rect. 5 13
766 188.72 precipitation 0.1 10 < th dose dependent rect. 5 13
769 188.76 radiation 1.0 10 < th dose independent rect. 20 12
795 188.98 wind 1.0 90 > th dose independent rect. 5 2
798 188.99 atmosphere 1015.0 10 < th dose dependent rect. 5 2
822 189.29 temperature 10.0 10 > th dose independent rect. 18 11
827 189.29 temperature 10.0 10 > th dose independent rect. 5 13
829 189.29 atmosphere 1015.0 10 < th dose independent rect. 5 13
835 189.35 atmosphere 995.0 10 > th dose independent rect. 18 11
842 189.42 radiation 1.0 10 < th dose dependent rect. 20 12
870 189.54 wind 9.0 10 < th dose dependent rect. 9 20
880 189.69 temperature 10.0 10 > th dose dependent rect. 9 20
903 189.96 humidity 50.0 10 > th dose dependent rect. 20 9
931 190.17 radiation 1.0 10 < th dose dependent rect. 18 14
962 190.58 radiation 1.0 10 < th dose independent rect. 18 14
969 190.64 precipitation 0.1 10 < th dose independent rect. 20 9
970 190.64 precipitation 0.1 10 < th dose dependent rect. 20 9