BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0569500 Os05g0569500|AF049892
(238 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05510.1 | chr1:1629527-1630690 FORWARD LENGTH=242 335 1e-92
AT2G31985.1 | chr2:13614086-13615619 REVERSE LENGTH=242 323 6e-89
AT5G45690.1 | chr5:18535139-18536259 REVERSE LENGTH=248 155 2e-38
AT1G29680.1 | chr1:10377900-10378931 REVERSE LENGTH=238 153 9e-38
AT4G18920.1 | chr4:10368784-10370086 FORWARD LENGTH=248 145 2e-35
>AT1G05510.1 | chr1:1629527-1630690 FORWARD LENGTH=242
Length = 241
Score = 335 bits (860), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 156/230 (67%), Positives = 180/230 (78%), Gaps = 2/230 (0%)
Query: 9 EVPGKPXXXXXXXXXXXXXSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHHFCAHLNED 68
+VPG+P ++Q F P+NQIHQHLCAFHFYA DMTRQVEAHHFC H+NED
Sbjct: 14 KVPGEPTKTGTSMVDTAASAVQSFAPINQIHQHLCAFHFYAYDMTRQVEAHHFCGHINED 73
Query: 69 MRQCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLFMPGVPGVV 128
MRQCLI+DGPDA ARLIG+EYIV E LF+TLPDDEK LWHTHE+EVKGG LFMPGVP +
Sbjct: 74 MRQCLIYDGPDANARLIGLEYIVTEKLFMTLPDDEKKLWHTHEWEVKGGFLFMPGVPEAI 133
Query: 129 ERRDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQLRQELAKCVEEKFSVSF 188
+R+DLE+V KTYGK HFWQVD G LP+GLP IMMA+TRDGQL E+ K E++F VS
Sbjct: 134 QRQDLEKVAKTYGKVYHFWQVDLGHQLPIGLPNIMMAVTRDGQLYPEMIKETEKQFGVSI 193
Query: 189 DKERENRAYMSGPDHGIHPLANAAGKGLKTDLREVDLPAMTTAHAGRVFT 238
DKERE+RAYM GPDHGIHPLAN GKGLK +LREVD+ + + RVF
Sbjct: 194 DKERESRAYMKGPDHGIHPLANGGGKGLKLELREVDIKPVES--VPRVFV 241
>AT2G31985.1 | chr2:13614086-13615619 REVERSE LENGTH=242
Length = 241
Score = 323 bits (827), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 146/229 (63%), Positives = 180/229 (78%), Gaps = 2/229 (0%)
Query: 10 VPGKPXXXXXXXXXXXXXSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHHFCAHLNEDM 69
VPG+ ++Q F PVNQIHQHLCAFHFYADDM RQVEAHHFC+H+NE+M
Sbjct: 15 VPGETTKTGTSIIDTAASAVQSFAPVNQIHQHLCAFHFYADDMARQVEAHHFCSHVNEEM 74
Query: 70 RQCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLFMPGVPGVVE 129
RQCLI+DGPDA ARLIG+EYIV+E LF+TLPD+EK LWH+HE+EVKGG LFMPGVPG ++
Sbjct: 75 RQCLIYDGPDANARLIGLEYIVSEKLFMTLPDEEKKLWHSHEWEVKGGFLFMPGVPGAIQ 134
Query: 130 RRDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQLRQELAKCVEEKFSVSFD 189
R+DL++V KTYGK HFWQVD G LP+GLP +MMA+TRDGQL E+ + E++F VS +
Sbjct: 135 RKDLDKVAKTYGKVFHFWQVDLGHELPIGLPNVMMAVTRDGQLFHEMIQEAEKRFGVSVE 194
Query: 190 KERENRAYMSGPDHGIHPLANAAGKGLKTDLREVDLPAMTTAHAGRVFT 238
ER++RAYMSGP+ GIHPLAN GKG+K +LREVD+ + + G VF
Sbjct: 195 GERDSRAYMSGPELGIHPLANGGGKGMKLELREVDIKPVES--VGSVFV 241
>AT5G45690.1 | chr5:18535139-18536259 REVERSE LENGTH=248
Length = 247
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 14/224 (6%)
Query: 11 PGKPXXXXXXXXXXXXXSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHHFCAHLNEDMR 70
PG P +Q P+ Q+ HLC+F Y D +RQ+E + + LN+D
Sbjct: 22 PGDPKTMKTVVMDKGAAMMQSLKPIKQMSLHLCSFACYGHDPSRQIEVNFYVHRLNQDFL 81
Query: 71 QCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLFMPGVPGVVER 130
QC ++D + LIG+EYIV+E LF +L +E+ LWH+H++E++ G+L P VP +V +
Sbjct: 82 QCAVYDCDSSKPHLIGIEYIVSERLFESLDPEEQKLWHSHDYEIQTGLLVTPRVPELVAK 141
Query: 131 RDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMAL--TRDGQLRQELAKCVEEKFSVSF 188
+LE + KTYGK WQ DRGD LPLG P +MM+ G+++ L K ++++ +S
Sbjct: 142 TELENIAKTYGKFWCTWQTDRGDKLPLGAPSLMMSPQDVNMGKIKPGLLKKRDDEYGIST 201
Query: 189 DKERENRAYMSGP-------DHGIHPLANAAGKGLKTDLREVDL 225
+ + +R + GP D+ +H GKGL D+ E ++
Sbjct: 202 ESLKTSRVGIMGPEKKNSMADYWVH-----HGKGLAVDIIETEM 240
>AT1G29680.1 | chr1:10377900-10378931 REVERSE LENGTH=238
Length = 237
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 132/231 (57%), Gaps = 7/231 (3%)
Query: 1 MAASCHEVEVP-GKPXXXXXXXXXXXXXSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAH 59
MA S + +VP G P +Q PV Q++ H+ F Y DM+R + H
Sbjct: 1 MALSGGDDQVPPGGPMTVSTRLIDAGSTIMQRRLPVKQMNTHVSTFAIYGGDMSRLIGTH 60
Query: 60 HFCAHLNEDMRQCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVL 119
H+ +N++ QC ++ + A LIG+EY++++ L+ TL +DE+ LWH+H +EVK G
Sbjct: 61 HYVHRVNDEFLQCAVYASDRSDAPLIGIEYVISDRLYETLSEDEQKLWHSHAYEVKSGSW 120
Query: 120 FMPGVPGVVERRDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQ--LRQELA 177
P +P VV +L+ + KTYGK WQ+DRGD LP+G P++MM+ GQ LR EL
Sbjct: 121 AYPRLPEVVAAPELKNIAKTYGKFWCTWQIDRGDKLPMGAPELMMSPQGVGQGVLRPELV 180
Query: 178 KCVEEKFSVSFDKERENRAYMSGPDHGIHPLANAA---GKGLKTDLREVDL 225
K +EK+++S D + RA ++ P+ I+P+A+ GK D+ V++
Sbjct: 181 KRRDEKYNISTDDLKHTRAEIAEPE-WINPMADYWKQHGKCFVLDIATVEM 230
>AT4G18920.1 | chr4:10368784-10370086 FORWARD LENGTH=248
Length = 247
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 4/228 (1%)
Query: 2 AASCHEVEVPGKPXXXXXXXXXXXXXSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHHF 61
A+S E G P +Q P+ Q+ H+C+F Y+ D RQ+E H +
Sbjct: 13 ASSGDGKEPMGNPTKTTTAMLEKGTAMMQSMKPIRQMSLHVCSFACYSHDPGRQIEVHIY 72
Query: 62 CAHLNEDMRQCLIFDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLFM 121
+N+D QC ++D + A LIG+EYIV+E LF +L +E+ LWH+H++E++ +L
Sbjct: 73 GHRVNQDFLQCAVYDSNSSKAHLIGIEYIVSEKLFESLSPEEQKLWHSHDYEIQMALLVT 132
Query: 122 PGVPGVVERRDLERVCKTYGKTIHFWQVDRGDALPLGLPQIMMAL--TRDGQLRQELAKC 179
P VP +V + +L+ + K+YGK WQ+DRGD LPLG+P +M++ G+++ EL K
Sbjct: 133 PRVPELVAKPELKNLAKSYGKFWCTWQIDRGDKLPLGVPSLMVSPQDVNLGRIKPELVKK 192
Query: 180 VEEKFSVSFDKERENRAYMSGPDHG--IHPLANAAGKGLKTDLREVDL 225
+E+ +S + + +R + GP+ + KG D+ E D+
Sbjct: 193 RDEEHGISTESLKPSRDGICGPEKKNLVADYWVRFRKGFALDVVETDM 240
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,266,159
Number of extensions: 221474
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 5
Length of query: 238
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 142
Effective length of database: 8,474,633
Effective search space: 1203397886
Effective search space used: 1203397886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)