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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0749000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1264 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0298) R2 : 5.84e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0102 (0.0627) R2dN8 : 7.55e-05 R2N8 : 5.84e-05
σ : 0.561
deviance : 144.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131 0.538 3.23 0.06 0.207 2.78 -0.616 5.95 0.0198 5.49 17.54 696 -- --
141.23 0.558 3.19 0.0637 0.177 0.0973 -0.796 -- 0.0112 5 17.54 696 -- --
131.85 0.535 3.22 0.0587 0.207 2.84 -- 6.14 0.0174 5.84 17.47 738 -- --
140.18 0.551 3.17 0.133 0.189 0.363 -- -- 0.0615 5.58 24.4 982 -- --
134.04 0.539 3.23 0.0714 -- 2.95 -- 6.33 0.0263 -- 17.37 706 -- --
141.26 0.557 3.19 0.0557 0.177 -- -0.797 -- 0.009 4.99 -- -- -- --
142.1 0.558 3.18 0.0596 0.21 -- -- -- 0.0136 7.14 -- -- -- --
141.08 0.553 3.17 0.178 -- 0.442 -- -- 0.103 -- 29.8 611 -- --
140.64 0.552 3.18 -- 0.209 0.312 -- -- 0.0578 6.48 24.3 982 -- --
144.44 0.562 3.19 0.0636 -- -- -- -- 0.0173 -- -- -- -- --
142.19 0.558 3.19 -- 0.211 -- -- -- 0.00694 7.13 -- -- -- --
141.85 0.555 3.18 -- -- 0.381 -- -- 0.073 -- 29.9 608 -- --
144.54 0.561 3.19 -- -- -- -- -- 0.0102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.24 temperature 25.0 90 > th dose dependent rect. 2 2
2 127.29 temperature 25.0 90 > th dose dependent rect. 1 4
3 127.47 temperature 25.0 90 > th dose independent rect. 1 3
4 127.72 temperature 25.0 270 > th dose independent rect. 2 1
15 128.95 wind 1.0 10 < th dose dependent rect. 2 1
16 129.12 wind 1.0 30 < th dose independent rect. 1 2
22 129.43 wind 9.0 4320 < th dose independent rect. 3 1
29 129.70 wind 1.0 10 < th dose independent rect. 15 12
31 129.71 wind 1.0 10 < th dose independent rect. 17 10
33 129.72 wind 1.0 10 < th dose independent rect. 21 6
38 129.91 wind 1.0 10 < th dose independent rect. 12 15
40 130.00 atmosphere 1005.0 10 > th dose dependent rect. 2 3
54 131.02 temperature 20.0 720 < th dose dependent rect. 7 1
58 131.19 wind 9.0 4320 > th dose independent rect. 3 1
90 131.19 wind 9.0 4320 > th dose dependent rect. 3 1
122 131.23 temperature 20.0 1440 < th dose independent rect. 12 1
132 131.39 temperature 20.0 1440 < th dose dependent rect. 12 1
138 131.50 temperature 20.0 1440 < th dose dependent rect. 19 1
140 131.59 temperature 20.0 1440 < th dose independent rect. 12 6
143 131.60 temperature 20.0 1440 > th dose independent rect. 17 1
144 131.60 humidity 90.0 1440 > th dose independent rect. 12 1
145 131.62 temperature 20.0 1440 < th dose independent rect. 17 1
147 131.62 humidity 90.0 1440 > th dose dependent rect. 12 1
152 131.65 wind 1.0 30 < th dose dependent rect. 21 6
166 131.73 temperature 20.0 1440 > th dose independent rect. 12 1
174 131.80 temperature 20.0 1440 < th dose independent rect. 9 9
191 131.89 temperature 20.0 1440 > th dose independent rect. 12 6
211 131.93 temperature 20.0 1440 < th dose dependent rect. 12 9
213 131.94 temperature 20.0 1440 > th dose independent rect. 9 9
215 131.94 temperature 20.0 1440 < th dose dependent rect. 7 17
225 131.97 humidity 90.0 1440 < th dose independent rect. 11 2
232 131.98 temperature 20.0 1440 < th dose dependent rect. 12 12
240 132.02 temperature 20.0 720 > th dose independent rect. 7 8
259 132.08 temperature 20.0 720 < th dose dependent rect. 24 1
260 132.08 wind 1.0 720 < th dose dependent rect. 7 3
265 132.12 atmosphere 1005.0 270 > th dose dependent rect. 1 2
269 132.13 temperature 20.0 10 > th dose dependent rect. 2 1
272 132.14 atmosphere 1005.0 10 > th dose independent rect. 2 1
273 132.14 temperature 20.0 720 < th dose independent rect. 7 2
282 132.18 temperature 20.0 1440 < th dose dependent rect. 22 1
284 132.20 temperature 20.0 10 > th dose independent rect. 2 1
286 132.22 humidity 90.0 10 > th dose independent rect. 2 1
302 132.28 atmosphere 995.0 10 > th dose independent rect. 3 23
326 132.37 temperature 10.0 10 > th dose independent rect. 2 1
328 132.37 temperature 30.0 10 < th dose independent rect. 2 1
329 132.37 humidity 50.0 10 > th dose independent rect. 2 1
333 132.37 atmosphere 995.0 10 > th dose independent rect. 2 1
334 132.37 atmosphere 1010.0 10 < th dose independent rect. 2 1
336 132.37 radiation 1.0 10 < th dose independent rect. 2 1
341 132.37 precipitation 0.1 10 < th dose independent rect. 2 1
343 132.37 temperature 10.0 10 > th dose independent rect. 3 23
344 132.37 temperature 20.0 1440 < th dose dependent sin 20 NA
345 132.37 humidity 50.0 10 > th dose dependent rect. 2 1
347 132.37 radiation 1.0 10 < th dose dependent rect. 2 1
352 132.37 precipitation 0.1 10 < th dose dependent rect. 2 1
353 132.37 temperature 20.0 720 < th dose dependent rect. 24 8
359 132.38 atmosphere 995.0 10 > th dose dependent rect. 2 1
367 132.40 atmosphere 1010.0 30 < th dose dependent rect. 2 1
392 132.44 temperature 20.0 720 < th dose dependent rect. 24 17
442 132.47 temperature 20.0 720 < th dose dependent sin 0 NA
494 132.53 wind 1.0 720 < th dose independent rect. 6 4
503 132.54 temperature 30.0 30 < th dose dependent rect. 2 1
504 132.54 radiation 1.0 4320 < th dose dependent rect. 3 1
512 132.55 temperature 20.0 720 < th dose dependent rect. 24 5
563 132.61 temperature 20.0 720 < th dose dependent rect. 24 3
571 132.62 temperature 10.0 1440 > th dose independent rect. 3 1
574 132.62 temperature 30.0 1440 < th dose independent rect. 3 1
578 132.62 humidity 50.0 1440 > th dose independent rect. 3 1
587 132.62 atmosphere 995.0 1440 > th dose independent rect. 3 1
588 132.62 radiation 1.0 1440 < th dose independent rect. 3 1
609 132.62 temperature 10.0 1440 > th dose independent rect. 4 23
742 132.71 temperature 20.0 720 < th dose dependent no NA NA
754 132.72 temperature 20.0 720 < th dose dependent rect. 4 23
756 132.73 precipitation 0.1 30 < th dose independent rect. 3 23
767 132.73 temperature 20.0 720 < th dose dependent rect. 2 23
768 132.73 precipitation 0.1 30 < th dose dependent rect. 3 23
789 132.78 wind 1.0 30 < th dose dependent rect. 12 15
839 132.89 wind 1.0 30 > th dose independent rect. 2 1
954 133.30 wind 1.0 10 > th dose independent rect. 5 23
985 133.47 wind 9.0 30 < th dose independent rect. 3 23