BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0749000 Os01g0749000|AK107255
(252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0749000 Protein of unknown function DUF1264 family pro... 471 e-133
Os01g0728700 Protein of unknown function DUF1264 family pro... 288 4e-78
Os05g0569500 Protein of unknown function DUF1264 family pro... 167 5e-42
AK111221 147 6e-36
>Os01g0749000 Protein of unknown function DUF1264 family protein
Length = 252
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/252 (92%), Positives = 232/252 (92%)
Query: 1 MASSNEKPLXXXXXXXXXXXXXXXXXXXXTTVDSMLLDKGAAMLQALRPVKHIKQHVCTF 60
MASSNEKPL TTVDSMLLDKGAAMLQALRPVKHIKQHVCTF
Sbjct: 1 MASSNEKPLPTPISAAAGGSGGNAPPGRPTTVDSMLLDKGAAMLQALRPVKHIKQHVCTF 60
Query: 61 ALYAHDPRRQVETHHFVSRLNQDVLQCAVYDADDKHARLIGVEYIVSRKIFDSLPAEEQR 120
ALYAHDPRRQVETHHFVSRLNQDVLQCAVYDADDKHARLIGVEYIVSRKIFDSLPAEEQR
Sbjct: 61 ALYAHDPRRQVETHHFVSRLNQDVLQCAVYDADDKHARLIGVEYIVSRKIFDSLPAEEQR 120
Query: 121 LWHSHAHEIKAGLWVSPHVPGMLEKAELEKMAGTFGKFWCTWQVDRGDRLPLGAPALMVS 180
LWHSHAHEIKAGLWVSPHVPGMLEKAELEKMAGTFGKFWCTWQVDRGDRLPLGAPALMVS
Sbjct: 121 LWHSHAHEIKAGLWVSPHVPGMLEKAELEKMAGTFGKFWCTWQVDRGDRLPLGAPALMVS 180
Query: 181 PQDDPAADVRPDLVRNRDDKYRYSTTELRAARADVAVPAEPRPGQADYWLRHRKGFAVDV 240
PQDDPAADVRPDLVRNRDDKYRYSTTELRAARADVAVPAEPRPGQADYWLRHRKGFAVDV
Sbjct: 181 PQDDPAADVRPDLVRNRDDKYRYSTTELRAARADVAVPAEPRPGQADYWLRHRKGFAVDV 240
Query: 241 VPHEMKCHAPFP 252
VPHEMKCHAPFP
Sbjct: 241 VPHEMKCHAPFP 252
>Os01g0728700 Protein of unknown function DUF1264 family protein
Length = 250
Score = 288 bits (736), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 143/225 (63%), Positives = 166/225 (73%), Gaps = 3/225 (1%)
Query: 30 TTVDSMLLDKGAAMLQALRPVKHIKQHVCTFALYAHDPRRQVETHHFVSRLNQDVLQCAV 89
TTV S LLD GA +QAL+PV+ +KQH C+FALYAHD RQVE HHFVSRLNQDVLQCAV
Sbjct: 27 TTVSSQLLDMGAQAVQALKPVRQMKQHACSFALYAHDLSRQVEVHHFVSRLNQDVLQCAV 86
Query: 90 YDADDKHARLIGVEYIVSRKIFDSLPAEEQRLWHSHAHEIKAGLWVSPHVPGMLEKAELE 149
YD+D ARLIGVEYIVS IF+SLP EEQ+LWHSHA+E+KAGLW VP L+ +E+
Sbjct: 87 YDSDKPSARLIGVEYIVSDAIFESLPPEEQKLWHSHAYEVKAGLWTDVGVPEPLQSSEMA 146
Query: 150 KMAGTFGKFWCTWQVDRGDRLPLGAPALMVSPQDDPAADVRPDLVRNRDDKYRY--STTE 207
+MA T+GK WCTWQVDRGD LPLGAPALMVSPQ VR +LV RD++Y+ S
Sbjct: 147 RMAKTYGKLWCTWQVDRGDALPLGAPALMVSPQAVEPGRVRAELVHGRDERYKIDSSAQG 206
Query: 208 LRAARADVAVPAEPRPGQADYWLRHRKGFAVDVVPHEMKCHAPFP 252
L+ AR ++ P P ADYW H KGFA+DV EMK HAPFP
Sbjct: 207 LKGARVEMDEPEWINP-NADYWRLHGKGFAIDVTATEMKRHAPFP 250
>Os05g0569500 Protein of unknown function DUF1264 family protein
Length = 238
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 117/189 (61%), Gaps = 2/189 (1%)
Query: 30 TTVDSMLLDKGAAMLQALRPVKHIKQHVCTFALYAHDPRRQVETHHFVSRLNQDVLQCAV 89
T + LL+ +Q PV I QH+C F YA D RQVE HHF + LN+D+ QC +
Sbjct: 15 TETGTALLEAATGSIQGFGPVNQIHQHLCAFHFYADDMTRQVEAHHFCAHLNEDMRQCLI 74
Query: 90 YDADDKHARLIGVEYIVSRKIFDSLPAEEQRLWHSHAHEIKAGLWVSPHVPGMLEKAELE 149
+D D ARLIGVEYIV+ +F +LP +E+ LWH+H E+K G+ P VPG++E+ +LE
Sbjct: 75 FDGPDAGARLIGVEYIVAEPLFLTLPDDEKPLWHTHEFEVKGGVLFMPGVPGVVERRDLE 134
Query: 150 KMAGTFGKFWCTWQVDRGDRLPLGAPALMVSPQDDPAADVRPDLVRNRDDKYRYSTTELR 209
++ T+GK WQVDRGD LPLG P +M++ D +R +L + ++K+ S + R
Sbjct: 135 RVCKTYGKTIHFWQVDRGDALPLGLPQIMMALTRD--GQLRQELAKCVEEKFSVSFDKER 192
Query: 210 AARADVAVP 218
RA ++ P
Sbjct: 193 ENRAYMSGP 201
>AK111221
Length = 229
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 118/208 (56%), Gaps = 9/208 (4%)
Query: 37 LDKGAAMLQALRPVKHIKQHVCTFALYAHDPRR-QVETHHFVSRLNQDVLQCAVYDADDK 95
L+ GAA +Q PVK I H+ F YAHDP R VE +H+ S LN+DV QC +YD+ +
Sbjct: 21 LETGAAAVQNFAPVKRICAHLNAFHAYAHDPMRPAVEANHYCSHLNEDVRQCILYDSPEP 80
Query: 96 HARLIGVEYIVSRKIFDSLPAEEQRLWHSHAHEIKAGLWVSPHVPGMLEKA-------EL 148
AR+IG+EY+++ +++++L EEQ+LWHSH E+K+G+ + P M E A E+
Sbjct: 81 PARIIGIEYMITTRLYNNLDEEEQKLWHSHVFEVKSGMLIMPKPAAMPEAAWEAAENKEM 140
Query: 149 EKMAGTFGKFWCTWQVDRGDRLPLGAPALMVSPQDDPAADVRPDLVRNRDDKYRYSTTEL 208
E++ +GK + WQ DRGD LPLGAP LM S + + V+ RD ++
Sbjct: 141 EEVIHLYGKIYHLWQTDRGDTLPLGAPQLMTSYTEAGQMPNFEEKVKERDARFGSDFQRK 200
Query: 209 RAARADVAVPAEPRPGQADYWLRHRKGF 236
+ AR + P + A W + GF
Sbjct: 201 KQAREYIKEPVIHKNADAA-WAKVGHGF 227
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,808,698
Number of extensions: 388134
Number of successful extensions: 841
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 4
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)