BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0568300 Os05g0568300|Os05g0568300
         (179 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0568300  Similar to 50S ribosomal protein L12, chloropl...   210   5e-55
Os01g0662200  Similar to Ribosomal protein L12                    131   2e-31

>Os05g0568300 Similar to 50S ribosomal protein L12, chloroplast precursor (CL12)
          Length = 179

 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 119/179 (66%)

Query: 1   MAMASTAVSSTLPLFHVRTASSAPAALXXXXXXXXXXXHSVACNSTAASSPKVLELGDAI 60
           MAMASTAVSSTLPLFHVRTASSAPAAL           HSVACNSTAASSPKVLELGDAI
Sbjct: 1   MAMASTAVSSTLPLFHVRTASSAPAALRFTTRGRGGGRHSVACNSTAASSPKVLELGDAI 60

Query: 61  AGLTLEEARGLVDHLQERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTEFDVVIEEVP 120
           AGLTLEEARGLVDHLQERL                            EKTEFDVVIEEVP
Sbjct: 61  AGLTLEEARGLVDHLQERLGVSAAAFAPAAVVAAPGAAGGGEDGAPAEKTEFDVVIEEVP 120

Query: 121 SSARIATIKVVRALTNLALKEAKDLIEGLPXXXXXXXXXXXXXXXXXXXXXVGAKVSIA 179
           SSARIATIKVVRALTNLALKEAKDLIEGLP                     VGAKVSIA
Sbjct: 121 SSARIATIKVVRALTNLALKEAKDLIEGLPKKAKEAVSKEEAEEAKKQLEEVGAKVSIA 179



>Os01g0662200 Similar to Ribosomal protein L12
          Length = 158

 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 75/106 (70%), Gaps = 16/106 (15%)

Query: 45  STAASSPKVLELGDAIAGLTLEEARGLVDHLQERLXXXXXXXXXXXXXXXXXXXXXXXXX 104
           STA  SPKVLELGDAIAGLTLEEARGLVDHLQERL                         
Sbjct: 49  STATESPKVLELGDAIAGLTLEEARGLVDHLQERLGVSAAAADEAPAE------------ 96

Query: 105 XXXEKTEFDVVIEEVPSSARIATIKVVRALTNLALKEAKDLIEGLP 150
               KTEFDVVIEEVPSSARIA+IKVVRALTNLALKEAKDLIEGLP
Sbjct: 97  ----KTEFDVVIEEVPSSARIASIKVVRALTNLALKEAKDLIEGLP 138



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.126    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,001,998
Number of extensions: 67221
Number of successful extensions: 145
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 3
Length of query: 179
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 85
Effective length of database: 12,127,685
Effective search space: 1030853225
Effective search space used: 1030853225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)