Os01g0662200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein L12.
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Os01g0662200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein L12.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.93 | 0.493 | 7.41 | 0.18 | 0.772 | -0.558 | -0.045 | 1.1 | -0.866 | 21.5 | 20.56 | 218 | -- | -- |
| 114.92 | 0.499 | 7.44 | -0.00687 | 0.782 | -0.66 | -0.148 | -- | -0.908 | 21.3 | 20.5 | 208 | -- | -- |
| 109.93 | 0.488 | 7.41 | 0.179 | 0.772 | -0.557 | -- | 1.1 | -0.866 | 21.5 | 20.57 | 215 | -- | -- |
| 114.95 | 0.499 | 7.43 | -0.00785 | 0.77 | -0.653 | -- | -- | -0.911 | 21.4 | 20.5 | 208 | -- | -- |
| 143.39 | 0.558 | 7.41 | 0.24 | -- | -0.509 | -- | 0.965 | -0.913 | -- | 20.6 | 108 | -- | -- |
| 130.07 | 0.535 | 7.46 | -0.214 | 0.802 | -- | -0.145 | -- | -1.04 | 22 | -- | -- | -- | -- |
| 130.15 | 0.534 | 7.46 | -0.209 | 0.802 | -- | -- | -- | -1.04 | 22 | -- | -- | -- | -- |
| 145.61 | 0.562 | 7.42 | 0.0103 | -- | -0.706 | -- | -- | -0.894 | -- | 20.6 | 75 | -- | -- |
| 114.94 | 0.499 | 7.43 | -- | 0.769 | -0.66 | -- | -- | -0.908 | 21.4 | 20.5 | 208 | -- | -- |
| 168.85 | 0.607 | 7.44 | -0.199 | -- | -- | -- | -- | -1.04 | -- | -- | -- | -- | -- |
| 131.3 | 0.536 | 7.46 | -- | 0.802 | -- | -- | -- | -1.01 | 21.9 | -- | -- | -- | -- |
| 145.53 | 0.562 | 7.41 | -- | -- | -0.725 | -- | -- | -0.899 | -- | 20.6 | 77 | -- | -- |
| 169.89 | 0.608 | 7.43 | -- | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.87 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 13 |
| 2 | 104.95 | temperature | 20 | 270 | > th | dose independent | sin | 6 | NA |
| 6 | 105.30 | temperature | 20 | 270 | < th | dose independent | sin | 6 | NA |
| 9 | 105.44 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 16 | 106.15 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 16 |
| 29 | 106.78 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 32 | 106.86 | temperature | 20 | 270 | < th | dose dependent | sin | 7 | NA |
| 35 | 106.99 | temperature | 20 | 90 | < th | dose dependent | sin | 5 | NA |
| 79 | 107.68 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 21 |
| 118 | 108.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 119 | 108.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 129 | 108.39 | temperature | 20 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 191 | 109.01 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 13 |
| 201 | 109.09 | temperature | 20 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 275 | 109.69 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 283 | 109.75 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 306 | 109.94 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 366 | 110.32 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 22 |
| 375 | 110.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 10 |
| 402 | 110.47 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 410 | 110.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 423 | 110.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 478 | 110.82 | temperature | 15 | 90 | > th | dose dependent | sin | 4 | NA |
| 481 | 110.83 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 499 | 110.94 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 3 |
| 539 | 111.10 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 547 | 111.12 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 558 | 111.12 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 599 | 111.21 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 4 |
| 613 | 111.24 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 7 |
| 621 | 111.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 624 | 111.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 673 | 111.44 | wind | 9 | 720 | > th | dose independent | rect. | 18 | 16 |
| 696 | 111.49 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 10 |
| 713 | 111.52 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 718 | 111.54 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 760 | 111.64 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 764 | 111.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 782 | 111.70 | wind | 9 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 797 | 111.73 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 21 |
| 805 | 111.75 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 810 | 111.76 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 819 | 111.77 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 10 |
| 856 | 111.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 17 |
| 872 | 111.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 935 | 111.96 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 969 | 112.02 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 12 |