BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0564200 Os05g0564200|AK070198
         (304 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0564200  U2 snRNP auxiliary factor, small subunit            393   e-110
Os01g0667800  Similar to U2 snRNP auxiliary factor, small su...   350   9e-97
Os09g0491756  U2 snRNP auxiliary factor, small subunit            341   5e-94

>Os05g0564200 U2 snRNP auxiliary factor, small subunit
          Length = 304

 Score =  393 bits (1010), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120
           GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180
           QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLY 185
           RRKLY
Sbjct: 181 RRKLY 185



>Os01g0667800 Similar to U2 snRNP auxiliary factor, small subunit
          Length = 207

 Score =  350 bits (897), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 160/177 (90%), Positives = 170/177 (96%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60
           MAEHLASIFGTEKD+VNCPFYFKIGACRHGDRCS LHNRPT+SPT+V ANMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDKVNCPFYFKIGACRHGDRCSCLHNRPTISPTVVFANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120
           GVDAQGQPIDP +MQEHFEDFYEDI+EELSKFGE+E LNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIG 177
           QA AAH ALQGRFYSGRPIIV++SPVTDFREATCRQ+EENSCNRGGYCNF HVKQIG
Sbjct: 121 QAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQYEENSCNRGGYCNFTHVKQIG 177



>Os09g0491756 U2 snRNP auxiliary factor, small subunit
          Length = 290

 Score =  341 bits (874), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 153/185 (82%), Positives = 175/185 (94%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P+VSPT++L+NMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120
           G+DAQG PIDPEK+Q  FEDFYEDI+EELSK+GE+E+L+VCDN ADHMIGNVYVQFREE+
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180
           QA  A  AL GR+YSGRPIIVE+SPV+DFREATCRQ+EENSCNRGGYCNFMHVK+IGR+L
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLY 185
           R++L+
Sbjct: 181 RKRLF 185



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,141,703
Number of extensions: 273880
Number of successful extensions: 782
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 3
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)