Os01g0667800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to U2 snRNP auxiliary factor, small subunit.
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Os01g0667800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to U2 snRNP auxiliary factor, small subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.88 | 0.328 | 7.58 | -1.12 | 0.217 | -0.66 | -0.0859 | -1.17 | -0.269 | 14.5 | 29.9 | 9 | -- | -- |
| 50.15 | 0.332 | 7.6 | -1.32 | 0.235 | -0.636 | 0.35 | -- | -0.319 | 14.9 | 29.9 | 9 | -- | -- |
| 48.89 | 0.326 | 7.58 | -1.13 | 0.223 | -0.652 | -- | -1.1 | -0.271 | 14.5 | 29.9 | 8 | -- | -- |
| 50.49 | 0.331 | 7.6 | -1.3 | 0.235 | -0.652 | -- | -- | -0.309 | 14.5 | 30.91 | 9 | -- | -- |
| 50.79 | 0.332 | 7.59 | -1.15 | -- | -0.843 | -- | -1.22 | -0.307 | -- | 30.3 | 9 | -- | -- |
| 55.64 | 0.35 | 7.58 | -1.17 | 0.45 | -- | 0.407 | -- | -0.195 | 14.5 | -- | -- | -- | -- |
| 56.23 | 0.351 | 7.57 | -1.16 | 0.45 | -- | -- | -- | -0.193 | 14.4 | -- | -- | -- | -- |
| 52.57 | 0.339 | 7.61 | -1.37 | -- | -0.896 | -- | -- | -0.357 | -- | 30.91 | 9 | -- | -- |
| 91.5 | 0.448 | 7.55 | -- | 0.435 | -0.117 | -- | -- | -0.0819 | 14.5 | 30.91 | 9 | -- | -- |
| 68.21 | 0.386 | 7.58 | -1.18 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 91.69 | 0.448 | 7.55 | -- | 0.473 | -- | -- | -- | -0.0639 | 14.5 | -- | -- | -- | -- |
| 99.2 | 0.465 | 7.57 | -- | -- | -0.524 | -- | -- | -0.15 | -- | 30.91 | 9 | -- | -- |
| 104.88 | 0.478 | 7.55 | -- | -- | -- | -- | -- | -0.0734 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 2 | 44.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 6 | 44.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 19 | 45.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 45 | 45.64 | temperature | 25 | 30 | < th | dose independent | rect. | 4 | 15 |
| 80 | 46.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 114 | 46.42 | wind | 5 | 90 | < th | dose independent | rect. | 7 | 21 |
| 128 | 46.54 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 21 |
| 152 | 46.70 | radiation | 20 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 169 | 46.79 | humidity | 60 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 171 | 46.80 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 189 | 46.94 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 193 | 46.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 203 | 47.02 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 22 |
| 206 | 47.04 | humidity | 70 | 10 | > th | dose independent | rect. | 4 | 14 |
| 207 | 47.04 | temperature | 25 | 10 | < th | dose dependent | sin | 23 | NA |
| 219 | 47.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 243 | 47.18 | radiation | 20 | 30 | < th | dose independent | rect. | 4 | 14 |
| 255 | 47.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 259 | 47.25 | wind | 7 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 284 | 47.36 | radiation | 10 | 270 | > th | dose independent | sin | 7 | NA |
| 285 | 47.36 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 6 |
| 316 | 47.44 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 17 |
| 331 | 47.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 332 | 47.49 | wind | 5 | 270 | < th | dose independent | rect. | 6 | 6 |
| 339 | 47.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 357 | 47.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 364 | 47.61 | wind | 5 | 270 | < th | dose independent | rect. | 7 | 4 |
| 395 | 47.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 467 | 47.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 501 | 47.81 | humidity | 70 | 10 | > th | dose independent | rect. | 2 | 16 |
| 517 | 47.86 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 14 |
| 525 | 47.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 543 | 47.92 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 4 |
| 550 | 47.93 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 561 | 47.95 | radiation | 10 | 270 | < th | dose dependent | sin | 5 | NA |
| 565 | 47.96 | humidity | 90 | 10 | < th | dose independent | rect. | 7 | 8 |
| 629 | 48.06 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 7 |
| 636 | 48.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 14 |
| 639 | 48.07 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 663 | 48.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 679 | 48.14 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 16 |
| 684 | 48.15 | wind | 7 | 270 | < th | dose independent | rect. | 16 | 10 |
| 693 | 48.15 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 694 | 48.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 695 | 48.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 707 | 48.17 | radiation | 40 | 90 | < th | dose independent | rect. | 13 | 18 |
| 721 | 48.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 733 | 48.20 | wind | 7 | 10 | < th | dose independent | rect. | 8 | 21 |
| 745 | 48.21 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 8 |
| 752 | 48.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 851 | 48.35 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 20 |
| 860 | 48.36 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 8 |
| 871 | 48.37 | humidity | 60 | 10 | > th | dose dependent | sin | 2 | NA |
| 912 | 48.41 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 22 |
| 916 | 48.42 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 8 |
| 924 | 48.43 | radiation | 10 | 90 | > th | dose independent | sin | 3 | NA |
| 942 | 48.45 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 22 |
| 958 | 48.47 | atmosphere | 995 | 270 | > th | dose independent | rect. | 12 | 18 |
| 993 | 48.50 | wind | 5 | 270 | < th | dose independent | rect. | 6 | 13 |