BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0667800 Os01g0667800|J065043C18
         (207 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0667800  Similar to U2 snRNP auxiliary factor, small su...   439   e-124
Os05g0564200  U2 snRNP auxiliary factor, small subunit            350   3e-97
Os09g0491756  U2 snRNP auxiliary factor, small subunit            324   2e-89

>Os01g0667800 Similar to U2 snRNP auxiliary factor, small subunit
          Length = 207

 Score =  439 bits (1128), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MAEHLASIFGTEKDKVNCPFYFKIGACRHGDRCSCLHNRPTISPTVVFANMYQRPDMITP 60
           MAEHLASIFGTEKDKVNCPFYFKIGACRHGDRCSCLHNRPTISPTVVFANMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDKVNCPFYFKIGACRHGDRCSCLHNRPTISPTVVFANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQYEENSCNRGGYCNFTHVKQIGTWE 180
           QAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQYEENSCNRGGYCNFTHVKQIGTWE
Sbjct: 121 QAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQYEENSCNRGGYCNFTHVKQIGTWE 180

Query: 181 GSEEKTLWPLQKATTRQEPQPKPKPTP 207
           GSEEKTLWPLQKATTRQEPQPKPKPTP
Sbjct: 181 GSEEKTLWPLQKATTRQEPQPKPKPTP 207



>Os05g0564200 U2 snRNP auxiliary factor, small subunit
          Length = 304

 Score =  350 bits (899), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 160/177 (90%), Positives = 170/177 (96%)

Query: 1   MAEHLASIFGTEKDKVNCPFYFKIGACRHGDRCSCLHNRPTISPTVVFANMYQRPDMITP 60
           MAEHLASIFGTEKD+VNCPFYFKIGACRHGDRCS LHNRPT+SPT+V ANMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP +MQEHFEDFYEDI+EELSKFGE+E LNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQYEENSCNRGGYCNFTHVKQIG 177
           QA AAH ALQGRFYSGRPIIV++SPVTDFREATCRQ+EENSCNRGGYCNF HVKQIG
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIG 177



>Os09g0491756 U2 snRNP auxiliary factor, small subunit
          Length = 290

 Score =  324 bits (831), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 147/177 (83%), Positives = 164/177 (92%)

Query: 1   MAEHLASIFGTEKDKVNCPFYFKIGACRHGDRCSCLHNRPTISPTVVFANMYQRPDMITP 60
           MAEHLASIFGTEKD+VNCPFYFKIGACRHGDRCS LHN+P++SPT++ +NMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFREED 120
           G+DAQG PIDP ++Q  FEDFYEDIFEELSK+GEIE+L+VCDN ADHMIGNVYVQFREED
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQYEENSCNRGGYCNFTHVKQIG 177
           QAA A  AL GR+YSGRPIIV+FSPV+DFREATCRQYEENSCNRGGYCNF HVK+IG
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIG 177



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,157,474
Number of extensions: 356581
Number of successful extensions: 1662
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1664
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)