Os05g0564200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U2 snRNP auxiliary factor, small subunit.
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Os05g0564200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U2 snRNP auxiliary factor, small subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.74 | 0.186 | 13.9 | -0.0839 | 0.0974 | -0.513 | -0.0558 | 0.18 | 0.114 | 14 | 31.2 | 10 | -- | -- |
| 15.75 | 0.186 | 13.9 | -0.0523 | 0.0939 | -0.514 | -0.115 | -- | 0.123 | 13.8 | 31.2 | 10 | -- | -- |
| 15.73 | 0.186 | 13.9 | -0.0923 | 0.0997 | -0.508 | -- | 0.239 | 0.113 | 14.3 | 31.2 | 10 | -- | -- |
| 15.8 | 0.186 | 13.9 | -0.0544 | 0.0978 | -0.506 | -- | -- | 0.123 | 14.3 | 31.11 | 9 | -- | -- |
| 16.12 | 0.188 | 13.9 | -0.114 | -- | -0.609 | -- | 0.215 | 0.0949 | -- | 31.2 | 10 | -- | -- |
| 19.07 | 0.205 | 13.9 | 0.0605 | 0.265 | -- | -0.0308 | -- | 0.212 | 14.2 | -- | -- | -- | -- |
| 19.08 | 0.205 | 13.9 | 0.0596 | 0.265 | -- | -- | -- | 0.212 | 14.2 | -- | -- | -- | -- |
| 16.17 | 0.187 | 13.9 | -0.0813 | -- | -0.608 | -- | -- | 0.103 | -- | 31.1 | 6 | -- | -- |
| 15.87 | 0.187 | 13.9 | -- | 0.106 | -0.483 | -- | -- | 0.132 | 14.3 | 31.11 | 9 | -- | -- |
| 23.25 | 0.225 | 13.9 | 0.0485 | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
| 19.17 | 0.205 | 13.9 | -- | 0.264 | -- | -- | -- | 0.205 | 14.2 | -- | -- | -- | -- |
| 16.33 | 0.188 | 13.9 | -- | -- | -0.586 | -- | -- | 0.116 | -- | 31.12 | 4 | -- | -- |
| 23.31 | 0.225 | 13.9 | -- | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.56 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 3 | 13.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 4 | 13.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 6 | 13.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 7 | 13.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 28 | 13.93 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 33 | 13.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 43 | 14.04 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 44 | 14.04 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 49 | 14.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 52 | 14.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 56 | 14.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 65 | 14.12 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 82 | 14.17 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 133 | 14.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 198 | 14.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 235 | 14.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 501 | 14.95 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 19 |
| 543 | 15.00 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 17 |
| 572 | 15.03 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 6 |
| 613 | 15.06 | radiation | 10 | 270 | > th | dose independent | sin | 7 | NA |
| 704 | 15.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 753 | 15.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 762 | 15.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 13 |
| 796 | 15.22 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 7 |
| 996 | 15.38 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 7 |