BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0564200 Os05g0564200|AK070198
(304 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G42820.2 | chr5:17170445-17171296 REVERSE LENGTH=284 341 3e-94
AT1G27650.1 | chr1:9615152-9616042 FORWARD LENGTH=297 338 2e-93
AT1G10320.1 | chr1:3384164-3388373 REVERSE LENGTH=758 135 2e-32
AT3G44785.1 | chr3:16328221-16328448 REVERSE LENGTH=76 99 3e-21
AT2G16940.2 | chr2:7342869-7347052 REVERSE LENGTH=611 51 7e-07
>AT5G42820.2 | chr5:17170445-17171296 REVERSE LENGTH=284
Length = 283
Score = 341 bits (874), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 160/185 (86%), Positives = 176/185 (95%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 61 GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120
GVD QGQP+DP K+Q+HFEDFYEDI+EEL+KFGEVE+LNVCDNLADHMIGNVYV F+EE+
Sbjct: 61 GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120
Query: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180
A AA ALQGRFYSGRPII ++SPVTDFREATCRQ+EENSCNRGGYCNFMHVKQI REL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180
Query: 181 RRKLY 185
RRKL+
Sbjct: 181 RRKLF 185
>AT1G27650.1 | chr1:9615152-9616042 FORWARD LENGTH=297
Length = 296
Score = 338 bits (868), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 157/185 (84%), Positives = 177/185 (95%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 61 GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120
GVDAQGQP+DP K+QEHFEDF+ED++EEL KFGE+E+LN+CDNLADHMIGNVYVQF+EE+
Sbjct: 61 GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120
Query: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180
QA AA ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK + REL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180
Query: 181 RRKLY 185
RRKL+
Sbjct: 181 RRKLF 185
>AT1G10320.1 | chr1:3384164-3388373 REVERSE LENGTH=758
Length = 757
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 107/167 (64%), Gaps = 5/167 (2%)
Query: 9 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQP 68
FGTE+D+ +CPF+ K GACR G RCSR+H P S T+++ NMY P IT D +G
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGP-GITWEQD-EGLE 294
Query: 69 IDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNA 128
E+ + +E+FYED++ E K+GE+ VC N + H+ GNVYV +R E A+ A+ +
Sbjct: 295 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 354
Query: 129 LQGRFYSGRPIIVEYSPVTDFREATCRQFEEN---SCNRGGYCNFMH 172
+ GR+++G+ + E+ ++ ++ A C ++ ++ +C+RG CNF+H
Sbjct: 355 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401
>AT3G44785.1 | chr3:16328221-16328448 REVERSE LENGTH=76
Length = 75
Score = 98.6 bits (244), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 57/73 (78%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60
M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+ +P++SPT++L+N YQ+ +
Sbjct: 1 MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQGRLKQF 60
Query: 61 GVDAQGQPIDPEK 73
Q + DP+K
Sbjct: 61 LDPVQSREKDPKK 73
>AT2G16940.2 | chr2:7342869-7347052 REVERSE LENGTH=611
Length = 610
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 55 PDMITPGVDAQGQP---------IDP--EKMQEHFEDFYEDIYEELSKFGEVETLNVCDN 103
P +I G D G P DP E + ED ED+ EE SKFG++ + V N
Sbjct: 499 PGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKN 558
Query: 104 LADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEY 143
+G VY++F + A+ A AL GR+++G+ I Y
Sbjct: 559 ----SVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATY 594
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,616,210
Number of extensions: 177662
Number of successful extensions: 639
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 5
Length of query: 304
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 206
Effective length of database: 8,419,801
Effective search space: 1734479006
Effective search space used: 1734479006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)