BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0562400 Os05g0562400|AK121237
(1397 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0562400 DDT domain containing protein 2217 0.0
Os01g0672300 Conserved hypothetical protein 230 6e-60
>Os05g0562400 DDT domain containing protein
Length = 1397
Score = 2217 bits (5746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1116/1397 (79%), Positives = 1116/1397 (79%)
Query: 1 MLNRKREEQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKRMEKYLLKQSLR 60
MLNRKREEQV HKRMEKYLLKQSLR
Sbjct: 1 MLNRKREEQVRREMERNDRERRKEEERLLREKQKEEERFQREQRREHKRMEKYLLKQSLR 60
Query: 61 AXXXXXXXXXXXXXXXXXXXXXXXXXXXRRIARXXXXXXXXXXXXXXXXVSRSKGLPXXX 120
A RRIAR VSRSKGLP
Sbjct: 61 AEKIRQKEELRKEKEAARQKAANERATARRIAREYMELMEDERLELMELVSRSKGLPSML 120
Query: 121 XXXXXXXXXXXXFRGMLRQFPSEIVRLKVPFSIKPWTSSEDNIGNLLMVWKFFITFADVL 180
FRGMLRQFPSEIVRLKVPFSIKPWTSSEDNIGNLLMVWKFFITFADVL
Sbjct: 121 SLDSDTLQQLDSFRGMLRQFPSEIVRLKVPFSIKPWTSSEDNIGNLLMVWKFFITFADVL 180
Query: 181 GIPSFTLDEFVQSLHDYDSRLLGELHVALLKSIIKDIEDVARTPSVASGMTANPGGGHPQ 240
GIPSFTLDEFVQSLHDYDSRLLGELHVALLKSIIKDIEDVARTPSVASGMTANPGGGHPQ
Sbjct: 181 GIPSFTLDEFVQSLHDYDSRLLGELHVALLKSIIKDIEDVARTPSVASGMTANPGGGHPQ 240
Query: 241 IVEGAYDWGFNILAWQRHLNLLTWPEILRQFGLSAGLGPQLRKRNAENVNNHDDNEGRNG 300
IVEGAYDWGFNILAWQRHLNLLTWPEILRQFGLSAGLGPQLRKRNAENVNNHDDNEGRNG
Sbjct: 241 IVEGAYDWGFNILAWQRHLNLLTWPEILRQFGLSAGLGPQLRKRNAENVNNHDDNEGRNG 300
Query: 301 EDVISILRSGSAAVNAAAKMKEXXXXXXXXXXXXLTPGTVKFAAFHVLSLEGSQGLTILE 360
EDVISILRSGSAAVNAAAKMKE LTPGTVKFAAFHVLSLEGSQGLTILE
Sbjct: 301 EDVISILRSGSAAVNAAAKMKERGYGNRRRSRHRLTPGTVKFAAFHVLSLEGSQGLTILE 360
Query: 361 VAEKIQKSGLRDLTTSKTPEASISAALSRDSKLFERTAPSTYCVKTPYRKDPADSEAVLA 420
VAEKIQKSGLRDLTTSKTPEASISAALSRDSKLFERTAPSTYCVKTPYRKDPADSEAVLA
Sbjct: 361 VAEKIQKSGLRDLTTSKTPEASISAALSRDSKLFERTAPSTYCVKTPYRKDPADSEAVLA 420
Query: 421 AAREKIRVFQNTISECEEVEKDVXXXXXXXXXXXXXXXXXXXXXXVNIEEKDVKTSLVKA 480
AAREKIRVFQNTISECEEVEKDV VNIEEKDVKTSLVKA
Sbjct: 421 AAREKIRVFQNTISECEEVEKDVDDAERDEDSECDDADDDPDGDEVNIEEKDVKTSLVKA 480
Query: 481 QDGGMPTAVGDIKKETNSIVNSLTTPLIHTKSSESSSLRTLDKSVQVRTTSDLPAEISSD 540
QDGGMPTAVGDIKKETNSIVNSLTTPLIHTKSSESSSLRTLDKSVQVRTTSDLPAEISSD
Sbjct: 481 QDGGMPTAVGDIKKETNSIVNSLTTPLIHTKSSESSSLRTLDKSVQVRTTSDLPAEISSD 540
Query: 541 NHEGASDSAQDAEIDESNQGESWVQGLAEGDYCDLSVEERLNALVALIGVATEGNSIRAV 600
NHEGASDSAQDAEIDESNQGESWVQGLAEGDYCDLSVEERLNALVALIGVATEGNSIRAV
Sbjct: 541 NHEGASDSAQDAEIDESNQGESWVQGLAEGDYCDLSVEERLNALVALIGVATEGNSIRAV 600
Query: 601 LEERLEAASALKKQMWAEAQLDKRRSREEFSSKMQYDSGMGLKTDVDQQNTLAESNLTPV 660
LEERLEAASALKKQMWAEAQLDKRRSREEFSSKMQYDSGMGLKTDVDQQNTLAESNLTPV
Sbjct: 601 LEERLEAASALKKQMWAEAQLDKRRSREEFSSKMQYDSGMGLKTDVDQQNTLAESNLTPV 660
Query: 661 HNLVKDSNGNGSLVNNELPVDQQSQPNACSVVHERNGVRQEFSANPENLSGQQYVTSEKT 720
HNLVKDSNGNGSLVNNELPVDQQSQPNACSVVHERNGVRQEFSANPENLSGQQYVTSEKT
Sbjct: 661 HNLVKDSNGNGSLVNNELPVDQQSQPNACSVVHERNGVRQEFSANPENLSGQQYVTSEKT 720
Query: 721 RSQLKSYIGHKAEQLHVYRSLPLGQDRRRNRYWQFSTSASPDDPGSGRIFFESRDGYWRL 780
RSQLKSYIGHKAEQLHVYRSLPLGQDRRRNRYWQFSTSASPDDPGSGRIFFESRDGYWRL
Sbjct: 721 RSQLKSYIGHKAEQLHVYRSLPLGQDRRRNRYWQFSTSASPDDPGSGRIFFESRDGYWRL 780
Query: 781 IDSIETFDALVSSLDTRGIRESHLHSMLQSIEPTFKEAIGRKRCASIEPSAGRVLKNGTS 840
IDSIETFDALVSSLDTRGIRESHLHSMLQSIEPTFKEAIGRKRCASIEPSAGRVLKNGTS
Sbjct: 781 IDSIETFDALVSSLDTRGIRESHLHSMLQSIEPTFKEAIGRKRCASIEPSAGRVLKNGTS 840
Query: 841 EIISPNHSNEFGSPCSTLSGVATDSAMAYSDSFRIELGRNDVEKTAISERADLFIKWMWK 900
EIISPNHSNEFGSPCSTLSGVATDSAMAYSDSFRIELGRNDVEKTAISERADLFIKWMWK
Sbjct: 841 EIISPNHSNEFGSPCSTLSGVATDSAMAYSDSFRIELGRNDVEKTAISERADLFIKWMWK 900
Query: 901 ECNNHQPTCAMKHGKKRCSELIQCCDFCYQIYLAEETHCASCHKTFKSIHNISEHSSQCE 960
ECNNHQPTCAMKHGKKRCSELIQCCDFCYQIYLAEETHCASCHKTFKSIHNISEHSSQCE
Sbjct: 901 ECNNHQPTCAMKHGKKRCSELIQCCDFCYQIYLAEETHCASCHKTFKSIHNISEHSSQCE 960
Query: 961 EKRRTDPNWKMQISDYSVPVGXXXXXXXXATVEASVPAEALEPFWTDVYRKSWGVKLYST 1020
EKRRTDPNWKMQISDYSVPVG ATVEASVPAEALEPFWTDVYRKSWGVKLYST
Sbjct: 961 EKRRTDPNWKMQISDYSVPVGLRLLKLLLATVEASVPAEALEPFWTDVYRKSWGVKLYST 1020
Query: 1021 SSTKEVFEMLTILEGAIRRDFLSSDFETTTELLNLSTQDSASRNTVPRSGSADVLPWVPX 1080
SSTKEVFEMLTILEGAIRRDFLSSDFETTTELLNLSTQDSASRNTVPRSGSADVLPWVP
Sbjct: 1021 SSTKEVFEMLTILEGAIRRDFLSSDFETTTELLNLSTQDSASRNTVPRSGSADVLPWVPD 1080
Query: 1081 XXXXXXXXXXXXXXXISYTLRQKVGSNKERGAGEFMKLPPRYTPAKTKQETEPMGTGFDR 1140
ISYTLRQKVGSNKERGAGEFMKLPPRYTPAKTKQETEPMGTGFDR
Sbjct: 1081 TVAAVVLRLLDLDSAISYTLRQKVGSNKERGAGEFMKLPPRYTPAKTKQETEPMGTGFDR 1140
Query: 1141 QETWLTPSNXXXXXXXXXXXXXXXXXXXXXXXXXXKVPRGISSSPKIEFRGYSASAVSSE 1200
QETWLTPSN KVPRGISSSPKIEFRGYSASAVSSE
Sbjct: 1141 QETWLTPSNGRGGRGGRGRGSRGGSRGGRSRSRGGKVPRGISSSPKIEFRGYSASAVSSE 1200
Query: 1201 KAPXXXXXXXXXXXXXXXXXXXXXXQPSDIGARSIPKPNLLGSFSMLRNAKHTTAMESPQ 1260
KAP QPSDIGARSIPKPNLLGSFSMLRNAKHTTAMESPQ
Sbjct: 1201 KAPRKYARRGRNRGRGRGLRTVRPRQPSDIGARSIPKPNLLGSFSMLRNAKHTTAMESPQ 1260
Query: 1261 SSGAEEWGLERRPSYVKXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPDYSRDNSGSSPLQ 1320
SSGAEEWGLERRPSYVK LLPDYSRDNSGSSPLQ
Sbjct: 1261 SSGAEEWGLERRPSYVKDDEDNSASQSEESSEENSEPMNEEYDELLPDYSRDNSGSSPLQ 1320
Query: 1321 MMXXXXXXXXXXXXXXXXXXXXXXXXXXXQHVDEDNDDAEMXXXXXXXXXXXXXXXXXXX 1380
MM QHVDEDNDDAEM
Sbjct: 1321 MMDDGSDDNEEDAEGDEDGEEDGEDYDAEQHVDEDNDDAEMGEDDVEDNDDGDGGGGGAE 1380
Query: 1381 XXXXXXXXTSYSSEYSE 1397
TSYSSEYSE
Sbjct: 1381 NGDEDEDGTSYSSEYSE 1397
>Os01g0672300 Conserved hypothetical protein
Length = 417
Score = 230 bits (586), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/308 (43%), Positives = 174/308 (56%), Gaps = 15/308 (4%)
Query: 971 MQISDYSVPVGXXXXXXXXATVEASVPAEALEPFWTDVYRKSWGVKLYSTSSTKEVFEML 1030
MQ +D+SVP+G +T+EAS+P EA++PFWTD YRKSWGVKL+ST+S +E+F+ML
Sbjct: 1 MQTADHSVPIGVRLLKLQLSTIEASIPPEAIQPFWTDGYRKSWGVKLHSTTSLEEIFQML 60
Query: 1031 TILEGAIRRDFLSSDFETTTELLNLSTQDSASRNTVPRSGSADVLPWVPXXXXXXXXXXX 1090
T+LE AI+RD LSS+FETT+ELLNL+TQD+ S+N V SGSA VLPWVP
Sbjct: 61 TLLEAAIKRDHLSSEFETTSELLNLNTQDNPSQNHVGLSGSAAVLPWVPDTTAAIALRML 120
Query: 1091 XXXXXISYTLRQKVGSNKERGAGEFMKLPPRYTPAKTKQETEPM-GTGFDRQET-WLTPS 1148
+SY QK+ ER G+FMK P R+ K QE +P+ TG D + W T
Sbjct: 121 DLDSAVSYMQNQKM----ERNGGDFMKPPSRFVAVKNAQELDPLETTGLDLFDGRWAT-- 174
Query: 1149 NXXXXXXXXXXXXXXXXXXXXXXXXXXKVPRGISSSPKIEFRGYSASAVSSEKAPXXXXX 1208
+VPRGIS S +I F+ + ++ + +
Sbjct: 175 --GSGRRGRGRGSRGGSRGGRGRSRGGRVPRGISISSRIGFKDENEASRKNTRR-----G 227
Query: 1209 XXXXXXXXXXXXXXXXXQPSDIGARSIPKPNLLGSFSMLRNAKHTTAMESPQSSGAEEWG 1268
QPS+ RSIPK NLLGSFSML NAK T ESP+SSGA+EWG
Sbjct: 228 RTRGRGRGRGRRTVRSRQPSEGKGRSIPKENLLGSFSMLSNAKAATVEESPRSSGADEWG 287
Query: 1269 LERRPSYV 1276
LE R Y+
Sbjct: 288 LENRRPYI 295
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 37,449,328
Number of extensions: 1432103
Number of successful extensions: 2892
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2882
Number of HSP's successfully gapped: 2
Length of query: 1397
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1284
Effective length of database: 11,135,619
Effective search space: 14298134796
Effective search space used: 14298134796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 162 (67.0 bits)