Os05g0562400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DDT domain containing protein.
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Os05g0562400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DDT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.73 | 0.214 | 11.2 | 0.552 | 0.342 | -0.23 | -0.0654 | -1.05 | 0.19 | 6.69 | 29.99 | 4287 | -- | -- |
| 20.7 | 0.212 | 11.2 | 0.392 | 0.351 | -0.27 | 0.0188 | -- | 0.157 | 6.35 | 30.4 | 5819 | -- | -- |
| 20.74 | 0.212 | 11.2 | 0.551 | 0.341 | -0.23 | -- | -1.05 | 0.19 | 6.71 | 29.98 | 4287 | -- | -- |
| 20.62 | 0.212 | 11.2 | 0.369 | 0.331 | -0.291 | -- | -- | 0.163 | 6.43 | 30.11 | 5800 | -- | -- |
| 26.8 | 0.241 | 11.2 | 0.611 | -- | -0.21 | -- | -1.3 | 0.202 | -- | 29.81 | 4276 | -- | -- |
| 25.14 | 0.235 | 11.2 | 0.462 | 0.351 | -- | -0.0499 | -- | 0.13 | 6.42 | -- | -- | -- | -- |
| 25.15 | 0.235 | 11.2 | 0.461 | 0.351 | -- | -- | -- | 0.13 | 6.43 | -- | -- | -- | -- |
| 26.27 | 0.239 | 11.2 | 0.372 | -- | -0.307 | -- | -- | 0.174 | -- | 30.3 | 5739 | -- | -- |
| 24.22 | 0.229 | 11.2 | -- | 0.341 | -0.317 | -- | -- | 0.153 | 6.42 | 30.4 | 5769 | -- | -- |
| 31.56 | 0.263 | 11.3 | 0.47 | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
| 30.76 | 0.259 | 11.3 | -- | 0.357 | -- | -- | -- | 0.0788 | 6.36 | -- | -- | -- | -- |
| 29.75 | 0.254 | 11.3 | -- | -- | -0.357 | -- | -- | 0.141 | -- | 30.1 | 5757 | -- | -- |
| 37.39 | 0.285 | 11.3 | -- | -- | -- | -- | -- | 0.0854 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 2 | 20.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 7 | 20.60 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 46 | 20.61 | temperature | 30 | 4320 | < th | dose independent | sin | 14 | NA |
| 48 | 20.61 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 112 | 20.63 | temperature | 30 | 4320 | > th | dose independent | sin | 14 | NA |
| 140 | 20.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 296 | 20.73 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 303 | 20.73 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 15 |
| 351 | 20.73 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 441 | 20.75 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 581 | 20.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 599 | 20.77 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 675 | 20.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 711 | 20.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 10 |
| 734 | 20.87 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 759 | 20.88 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 784 | 20.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 835 | 20.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 837 | 20.91 | temperature | 30 | 4320 | > th | dose dependent | sin | 19 | NA |
| 925 | 20.92 | temperature | 30 | 4320 | > th | dose dependent | sin | 17 | NA |
| 930 | 20.92 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |