BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0561600 Os05g0561600|J023089N08
(398 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0561600 Protein of unknown function DUF1421 family pro... 677 0.0
Os01g0672800 Protein of unknown function DUF1421 family pro... 237 1e-62
Os01g0754500 Protein of unknown function DUF1421 family pro... 68 1e-11
>Os05g0561600 Protein of unknown function DUF1421 family protein
Length = 398
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/398 (86%), Positives = 344/398 (86%)
Query: 1 HYLSCQVQNSVQVLQDKQELAETQKELTKLQILHEESAQKSEGTAPSVLMTKEIDGSMPV 60
HYLSCQVQNSVQVLQDKQELAETQKELTKLQILHEESAQKSEGTAPSVLMTKEIDGSMPV
Sbjct: 1 HYLSCQVQNSVQVLQDKQELAETQKELTKLQILHEESAQKSEGTAPSVLMTKEIDGSMPV 60
Query: 61 AKHELALVPLHQVNAAQSPAMQFQSCNGXXXXXXXXXXXXXXXDQQHMNQATLYCMQTQA 120
AKHELALVPLHQVNAAQSPAMQFQSCNG DQQHMNQATLYCMQTQA
Sbjct: 61 AKHELALVPLHQVNAAQSPAMQFQSCNGLVLQQLVPVSLSTQQDQQHMNQATLYCMQTQA 120
Query: 121 HVEHRXXXXXXXXXXXVQRHTQNTPQTVVEAQQVTSQAPDFYIQPQQQWAHQTGXXXXXX 180
HVEHR VQRHTQNTPQTVVEAQQVTSQAPDFYIQPQQQWAHQTG
Sbjct: 121 HVEHRQAQPFQPAPQPVQRHTQNTPQTVVEAQQVTSQAPDFYIQPQQQWAHQTGQQVHQA 180
Query: 181 XXXXXXXXXXXXYNNIQQVPAQIVQMQTSSPQAQSAPHVTLLYPPYGSQQPACANSEPRS 240
YNNIQQVPAQIVQMQTSSPQAQSAPHVTLLYPPYGSQQPACANSEPRS
Sbjct: 181 RQPQPQVVQQQHYNNIQQVPAQIVQMQTSSPQAQSAPHVTLLYPPYGSQQPACANSEPRS 240
Query: 241 RSMAMQPSYSTISSSQRNHHEVAPVYVQSNTISVPLAEHSIXXXXXXXXXXFGNGSFKPS 300
RSMAMQPSYSTISSSQRNHHEVAPVYVQSNTISVPLAEHSI FGNGSFKPS
Sbjct: 241 RSMAMQPSYSTISSSQRNHHEVAPVYVQSNTISVPLAEHSIQSQQPPQLQSFGNGSFKPS 300
Query: 301 KVSLHGVASYTVQGNAQAYNTAYGNPSNNAATVVAVLPQQAQSSAPMVLHHLGPQSLQNH 360
KVSLHGVASYTVQGNAQAYNTAYGNPSNNAATVVAVLPQQAQSSAPMVLHHLGPQSLQNH
Sbjct: 301 KVSLHGVASYTVQGNAQAYNTAYGNPSNNAATVVAVLPQQAQSSAPMVLHHLGPQSLQNH 360
Query: 361 PIDMVEKVARMGYFKDQAESMALRMATAGQNVEFKHLA 398
PIDMVEKVARMGYFKDQAESMALRMATAGQNVEFKHLA
Sbjct: 361 PIDMVEKVARMGYFKDQAESMALRMATAGQNVEFKHLA 398
>Os01g0672800 Protein of unknown function DUF1421 family protein
Length = 429
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 170/390 (43%), Positives = 217/390 (55%), Gaps = 10/390 (2%)
Query: 6 QVQNSVQVLQDKQELAETQKELTKLQILHEESAQKSEGTAPSVLMTKEIDGSMPVAKHEL 65
QVQ SVQ+LQDK E++ET E +KLQI HE A+ +E +A S +E D S VAKHE+
Sbjct: 20 QVQKSVQILQDKHEISETPNEFSKLQIAHEFPARANEASAFSTF-GRENDHSTQVAKHEV 78
Query: 66 ALVPLHQVNAAQSPAMQFQSCNGXXXXXXXXXXXXXXXDQQHMNQATLYCMQTQAHVEHR 125
A +PL QVNA QSPA+ QS NG DQQ +QA +Y MQ+Q ++
Sbjct: 79 AFMPLQQVNAMQSPAVPVQSSNGYILQQLVPVSLSTQPDQQQPSQAAVYYMQSQNPIKCT 138
Query: 126 XXXXXXXXXXXVQRHTQNTPQTV-VEAQQVTSQAPDFYIQPQQQWAHQTGXXXXXXXXXX 184
+Q QN V V+ Q +SQ + Y QPQ Q H
Sbjct: 139 ESEPSESAVHVIQSQIQNPEARVAVDLSQKSSQVTELYPQPQDQRLHLPAQQVESQAWRT 198
Query: 185 XXXXXXXXYNNIQQVPAQIVQMQTSSPQAQSAPHVTLLYPPYGSQQPACANSEPRSRSMA 244
NIQQVP Q+VQ QTSSPQAQSAP V +LYPPY SQ+PA A +EP R+M
Sbjct: 199 QPLVVQPQQYNIQQVPPQLVQQQTSSPQAQSAPQVAVLYPPYSSQKPASATTEPLLRNMV 258
Query: 245 MQPSYSTISSSQRNHHEVAP-VYVQSNTISVPLAEHSIXXXXXXXXXXFGNGSF--KPSK 301
+ +S SS Q+ HHE P Y Q NT+ +P + +I G S +PSK
Sbjct: 259 V---HSPYSSPQQKHHEAMPSFYGQGNTVLLPSTDLNIQHQQPQPLQQHGLSSCPPQPSK 315
Query: 302 VSLHGVASYTVQGNAQAYNTAYGNPSNNAATVVAVLPQQAQSSAPMVLHHLGPQSLQNHP 361
+ VASY VQG+ Q+Y+ + NPSN AATVVAVLPQ +S PM HHLGPQ + N P
Sbjct: 316 PNHCSVASYAVQGSGQSYSATFKNPSNCAATVVAVLPQHP-ASGPMAFHHLGPQVVHNQP 374
Query: 362 I-DMVEKVARMGYFKDQAESMALRMATAGQ 390
+M E + +GY +D+ ES+AL + TA Q
Sbjct: 375 FGNMFETASVVGYPRDRVESVALPVVTAAQ 404
>Os01g0754500 Protein of unknown function DUF1421 family protein
Length = 594
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 93/204 (45%), Gaps = 12/204 (5%)
Query: 198 QVPAQIVQMQTSSP-QAQSAPHVTLLYPPYGSQQPACANSEPRSRSMAMQPSYSTISSSQ 256
Q+P Q +Q Q P Q Q P YP Y Q E SMAMQ Y+T++ +
Sbjct: 383 QLPPQAMQPQQHPPVQNQMRPQTPPNYPHYQPHQSLNPPPETLPGSMAMQGPYNTVAPAA 442
Query: 257 RNHHEVAPVYVQSNTISVPLAEHSIXXXXXXXXXXFGNGSF-KPSKVSLHGVASYTVQGN 315
+ EV Y +P +H++ GSF PSK G Y QG+
Sbjct: 443 GSRSEVPYSY---GGPGMPPPQHNMQRQQLPPPS---QGSFGPPSKGGYAGPPQYAPQGS 496
Query: 316 AQAYNTAYGNPSNNAATVVAVLPQQAQSSAPMVLHHLGP-QSLQNHPI-DMVEKVARMGY 373
+ YNTAYG P + + A PQ + + + H G Q ++ HP +M+EK MGY
Sbjct: 497 SHGYNTAYGYPPSGPSAAQA--PQMPPAPGNVGMSHPGSHQMMRGHPYGEMIEKAITMGY 554
Query: 374 FKDQAESMALRMATAGQNVEFKHL 397
++Q ++ RM +GQ ++F L
Sbjct: 555 PREQVMNVIQRMTESGQPMDFNTL 578
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.122 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,594,246
Number of extensions: 359107
Number of successful extensions: 897
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 4
Length of query: 398
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 295
Effective length of database: 11,657,759
Effective search space: 3439038905
Effective search space used: 3439038905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)