Os01g0672800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1421 family protein.
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Os01g0672800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1421 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.01 | 0.355 | 9.74 | 0.225 | 1.03 | -0.797 | 1.25 | 2.77 | 0.167 | 7.64 | 25.12 | 714 | -- | -- |
| 58.87 | 0.357 | 9.79 | -0.218 | 1.05 | -0.57 | 0.78 | -- | 0.0665 | 7.6 | 24.77 | 686 | -- | -- |
| 60.57 | 0.362 | 9.76 | 0.16 | 1.05 | -0.893 | -- | 3.09 | 0.0706 | 7.53 | 27.49 | 728 | -- | -- |
| 60.72 | 0.363 | 9.8 | -0.19 | 1.05 | -0.597 | -- | -- | 0.0463 | 7.53 | 25.5 | 686 | -- | -- |
| 96.86 | 0.458 | 9.72 | 0.628 | -- | -1.76 | -- | 4.55 | 0.306 | -- | 24.9 | 613 | -- | -- |
| 64.65 | 0.377 | 9.8 | -0.335 | 1.28 | -- | 1.06 | -- | 0.0138 | 7.61 | -- | -- | -- | -- |
| 67.76 | 0.385 | 9.8 | -0.31 | 1.29 | -- | -- | -- | 0.0114 | 7.51 | -- | -- | -- | -- |
| 99.34 | 0.464 | 9.8 | -0.0202 | -- | -1.41 | -- | -- | 0.154 | -- | 24.6 | 600 | -- | -- |
| 61.63 | 0.366 | 9.79 | -- | 1.04 | -0.629 | -- | -- | 0.07 | 7.52 | 25.5 | 691 | -- | -- |
| 156.3 | 0.584 | 9.83 | -0.291 | -- | -- | -- | -- | 0.0316 | -- | -- | -- | -- | -- |
| 70.3 | 0.392 | 9.79 | -- | 1.28 | -- | -- | -- | 0.0459 | 7.53 | -- | -- | -- | -- |
| 99.35 | 0.464 | 9.8 | -- | -- | -1.42 | -- | -- | 0.156 | -- | 24.6 | 597 | -- | -- |
| 158.53 | 0.588 | 9.82 | -- | -- | -- | -- | -- | 0.0638 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 6 | 53.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 8 | 53.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 17 | 54.41 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 12 |
| 24 | 54.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 27 | 54.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 36 | 54.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 44 | 55.03 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 13 |
| 64 | 55.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 6 |
| 71 | 55.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 73 | 55.45 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 86 | 55.54 | temperature | 25 | 270 | < th | dose independent | sin | 15 | NA |
| 101 | 55.63 | temperature | 25 | 270 | > th | dose dependent | sin | 13 | NA |
| 112 | 55.68 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 142 | 55.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 144 | 55.91 | temperature | 25 | 720 | > th | dose dependent | sin | 19 | NA |
| 152 | 55.94 | temperature | 10 | 270 | > th | dose dependent | sin | 16 | NA |
| 156 | 55.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 201 | 56.12 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 11 |
| 209 | 56.13 | temperature | 25 | 270 | < th | dose independent | rect. | 19 | 1 |
| 211 | 56.14 | temperature | 30 | 90 | < th | dose dependent | sin | 15 | NA |
| 250 | 56.23 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 5 |
| 314 | 56.38 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 14 |
| 321 | 56.40 | radiation | 10 | 720 | > th | dose independent | rect. | 16 | 1 |
| 348 | 56.46 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 7 |
| 355 | 56.47 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 13 |
| 357 | 56.47 | radiation | 10 | 720 | > th | dose independent | rect. | 16 | 14 |
| 438 | 56.61 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 12 |
| 497 | 56.72 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 498 | 56.73 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 8 |
| 531 | 56.77 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 577 | 56.81 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 639 | 56.90 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 14 |
| 658 | 56.93 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 9 |
| 685 | 56.96 | temperature | 25 | 270 | > th | dose independent | sin | 16 | NA |
| 693 | 56.96 | radiation | 20 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 731 | 57.00 | temperature | 10 | 720 | > th | dose dependent | sin | 23 | NA |
| 748 | 57.02 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 22 |
| 760 | 57.03 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 813 | 57.11 | radiation | 1 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 864 | 57.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 881 | 57.22 | radiation | 1 | 720 | > th | dose independent | sin | 19 | NA |
| 911 | 57.25 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 916 | 57.26 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |