BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0672800 Os01g0672800|AK101605
(429 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0672800 Protein of unknown function DUF1421 family pro... 788 0.0
Os05g0561600 Protein of unknown function DUF1421 family pro... 248 4e-66
Os01g0754500 Protein of unknown function DUF1421 family pro... 65 9e-11
>Os01g0672800 Protein of unknown function DUF1421 family protein
Length = 429
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/429 (91%), Positives = 393/429 (91%)
Query: 1 MDYHSEGTVNFRCLEKNLRQVQKSVQILQDKHEISETPNEFSKLQIAHEFPARANEASAF 60
MDYHSEGTVNFRCLEKNLRQVQKSVQILQDKHEISETPNEFSKLQIAHEFPARANEASAF
Sbjct: 1 MDYHSEGTVNFRCLEKNLRQVQKSVQILQDKHEISETPNEFSKLQIAHEFPARANEASAF 60
Query: 61 STFGRENDHSTQVAKHEVAFMPLQQVNAMQSPAVPVQSSNGYILQQLVPVSLSTQPDQQQ 120
STFGRENDHSTQVAKHEVAFMPLQQVNAMQSPAVPVQSSNGYILQQLVPVSLSTQPDQQQ
Sbjct: 61 STFGRENDHSTQVAKHEVAFMPLQQVNAMQSPAVPVQSSNGYILQQLVPVSLSTQPDQQQ 120
Query: 121 PSQAAVYYMQSQNPIKCTESEPSESAVHVIQSQIQNPEARVAVDLSQKSSQVTELYPQPQ 180
PSQAAVYYMQSQNPIKCTESEPSESAVHVIQSQIQNPEARVAVDLSQKSSQVTELYPQPQ
Sbjct: 121 PSQAAVYYMQSQNPIKCTESEPSESAVHVIQSQIQNPEARVAVDLSQKSSQVTELYPQPQ 180
Query: 181 DQRLHLPAQQVESQAWRTQPLVVQPQQYNIXXXXXXXXXXXXXXXXXXXXXXXXXLYPPY 240
DQRLHLPAQQVESQAWRTQPLVVQPQQYNI LYPPY
Sbjct: 181 DQRLHLPAQQVESQAWRTQPLVVQPQQYNIQQVPPQLVQQQTSSPQAQSAPQVAVLYPPY 240
Query: 241 SSQKPASATTEPLLRNMVVHSPYSSPQQKHHEAMPSFYGQGNTVLLPSTDLNIXXXXXXX 300
SSQKPASATTEPLLRNMVVHSPYSSPQQKHHEAMPSFYGQGNTVLLPSTDLNI
Sbjct: 241 SSQKPASATTEPLLRNMVVHSPYSSPQQKHHEAMPSFYGQGNTVLLPSTDLNIQHQQPQP 300
Query: 301 XXXXGLSSCPPQPSKPNHCSVASYAVQGSGQSYSATFKNPSNCAATVVAVLPQHPASGPM 360
GLSSCPPQPSKPNHCSVASYAVQGSGQSYSATFKNPSNCAATVVAVLPQHPASGPM
Sbjct: 301 LQQHGLSSCPPQPSKPNHCSVASYAVQGSGQSYSATFKNPSNCAATVVAVLPQHPASGPM 360
Query: 361 AFHHLGPQVVHNQPFGNMFETASVVGYPRDRVESVALPVVTAAQPADSVAMADKLNAGSN 420
AFHHLGPQVVHNQPFGNMFETASVVGYPRDRVESVALPVVTAAQPADSVAMADKLNAGSN
Sbjct: 361 AFHHLGPQVVHNQPFGNMFETASVVGYPRDRVESVALPVVTAAQPADSVAMADKLNAGSN 420
Query: 421 VTSPREWSG 429
VTSPREWSG
Sbjct: 421 VTSPREWSG 429
>Os05g0561600 Protein of unknown function DUF1421 family protein
Length = 398
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 170/390 (43%), Positives = 221/390 (56%), Gaps = 10/390 (2%)
Query: 20 QVQKSVQILQDKHEISETPNEFSKLQIAHEFPARANEASAFSTF-GRENDHSTQVAKHEV 78
QVQ SVQ+LQDK E++ET E +KLQI HE A+ +E +A S +E D S VAKHE+
Sbjct: 6 QVQNSVQVLQDKQELAETQKELTKLQILHEESAQKSEGTAPSVLMTKEIDGSMPVAKHEL 65
Query: 79 AFMPLQQVNAMQSPAVPVQSSNGYILQQLVPVSLSTQPDQQQPSQAAVYYMQSQNPIKCT 138
A +PL QVNA QSPA+ QS NG +LQQLVPVSLSTQ DQQ +QA +Y MQ+Q ++
Sbjct: 66 ALVPLHQVNAAQSPAMQFQSCNGLVLQQLVPVSLSTQQDQQHMNQATLYCMQTQAHVEHR 125
Query: 139 ESEPSESAVHVIQSQIQNPEARVAVDLSQKSSQVTELYPQPQDQRLHLPAQQVESQAWRT 198
+++P + A +Q QN V V+ Q +SQ + Y QPQ Q H QQV
Sbjct: 126 QAQPFQPAPQPVQRHTQNTPQTV-VEAQQVTSQAPDFYIQPQQQWAHQTGQQVHQARQPQ 184
Query: 199 QPLVVQPQQYNIXXXXXXXXXXXXXXXXXXXXXXXXXLYPPYSSQKPASATTEPLLRNMV 258
+V Q NI LYPPY SQ+PA A +EP R+M
Sbjct: 185 PQVVQQQHYNNIQQVPAQIVQMQTSSPQAQSAPHVTLLYPPYGSQQPACANSEPRSRSMA 244
Query: 259 V---HSPYSSPQQKHHEAMPSFYGQGNTVLLPSTDLNIXXXXXXXXXXXGLSSCPPQPSK 315
+ +S SS Q+ HHE P Y Q NT+ +P + +I G S +PSK
Sbjct: 245 MQPSYSTISSSQRNHHEVAP-VYVQSNTISVPLAEHSIQSQQPPQLQSFGNGSF--KPSK 301
Query: 316 PNHCSVASYAVQGSGQSYSATFKNPSNCAATVVAVLPQHP-ASGPMAFHHLGPQVVHNQP 374
+ VASY VQG+ Q+Y+ + NPSN AATVVAVLPQ +S PM HHLGPQ + N P
Sbjct: 302 VSLHGVASYTVQGNAQAYNTAYGNPSNNAATVVAVLPQQAQSSAPMVLHHLGPQSLQNHP 361
Query: 375 FGNMFETASVVGYPRDRVESVALPVVTAAQ 404
+M E + +GY +D+ ES+AL + TA Q
Sbjct: 362 I-DMVEKVARMGYFKDQAESMALRMATAGQ 390
>Os01g0754500 Protein of unknown function DUF1421 family protein
Length = 594
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 313 PSKPNHCSVASYAVQGSGQSYSATFKNP-SNCAATVVAVLPQHPASGPMAFHHLGP-QVV 370
PSK + YA QGS Y+ + P S +A +P PA G + H G Q++
Sbjct: 480 PSKGGYAGPPQYAPQGSSHGYNTAYGYPPSGPSAAQAPQMP--PAPGNVGMSHPGSHQMM 537
Query: 371 HNQPFGNMFETASVVGYPRDRVESVALPVVTAAQPADSVAMADKLNAGSNVTSPREW 427
P+G M E A +GYPR++V +V + + QP D + D+LN + PR W
Sbjct: 538 RGHPYGEMIEKAITMGYPREQVMNVIQRMTESGQPMDFNTLLDRLNEAGSGAPPRAW 594
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.124 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,648,133
Number of extensions: 529087
Number of successful extensions: 1423
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1410
Number of HSP's successfully gapped: 5
Length of query: 429
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 325
Effective length of database: 11,605,545
Effective search space: 3771802125
Effective search space used: 3771802125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)