BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0557000 Os05g0557000|AK059395
         (92 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0557000  Similar to 60S ribosomal protein L37a               185   7e-48
Os01g0679700  Similar to 60S ribosomal protein L37a               185   7e-48
AK062720                                                          117   2e-27

>Os05g0557000 Similar to 60S ribosomal protein L37a
          Length = 92

 Score =  185 bits (469), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92
          GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92



>Os01g0679700 Similar to 60S ribosomal protein L37a
          Length = 92

 Score =  185 bits (469), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92
          GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92



>AK062720 
          Length = 95

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 71/90 (78%), Gaps = 2/90 (2%)

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGC--K 58
          M+KRT+K GI+GK G RYGA+ RK+ +K+ VSQH+K+FC FCGKFA KRKAVGIW C   
Sbjct: 1  MSKRTQKMGIMGKCGARYGANPRKRARKLIVSQHAKHFCAFCGKFAFKRKAVGIWRCAAS 60

Query: 59 DCGKVKAGGAYTMNTASAVTVRSTIRRLRE 88
           C K  AGGAY +NT ++ TVRST+RRLRE
Sbjct: 61 GCDKTVAGGAYMLNTPNSSTVRSTVRRLRE 90



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,726,496
Number of extensions: 80523
Number of successful extensions: 211
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)