Os05g0557000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L37a.
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Os05g0557000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L37a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.29 | 0.449 | 13.4 | -0.208 | 0.848 | 0.613 | 0.617 | -1.65 | -0.121 | 18.3 | 19.8 | 2771 | -- | -- |
| 95 | 0.454 | 13.3 | 0.051 | 0.852 | 0.981 | 0.627 | -- | -0.0579 | 18.3 | 19.35 | 2813 | -- | -- |
| 92.21 | 0.447 | 13.4 | -0.215 | 0.851 | 0.617 | -- | -1.67 | -0.119 | 18.3 | 19.8 | 2761 | -- | -- |
| 95.86 | 0.456 | 13.4 | 0.00649 | 0.839 | 1.05 | -- | -- | -0.0636 | 18.1 | 18.9 | 2817 | -- | -- |
| 129.77 | 0.531 | 13.4 | -0.192 | -- | 0.573 | -- | -1.6 | -0.12 | -- | 19.7 | 2890 | -- | -- |
| 111.16 | 0.494 | 13.3 | 0.527 | 0.822 | -- | 0.838 | -- | 0.151 | 18.4 | -- | -- | -- | -- |
| 112.9 | 0.498 | 13.3 | 0.516 | 0.826 | -- | -- | -- | 0.154 | 18.4 | -- | -- | -- | -- |
| 132.18 | 0.535 | 13.3 | 0.0721 | -- | 1 | -- | -- | -0.0639 | -- | 19.6 | 1790 | -- | -- |
| 95.79 | 0.456 | 13.3 | -- | 0.838 | 1.04 | -- | -- | -0.0538 | 18.2 | 19 | 2816 | -- | -- |
| 148.31 | 0.569 | 13.3 | 0.495 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 119.93 | 0.512 | 13.3 | -- | 0.819 | -- | -- | -- | 0.096 | 18.4 | -- | -- | -- | -- |
| 132.36 | 0.536 | 13.3 | -- | -- | 1.03 | -- | -- | -0.0647 | -- | 19.7 | 1881 | -- | -- |
| 154.77 | 0.581 | 13.3 | -- | -- | -- | -- | -- | 0.0811 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.00 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 3 | 90.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 4 | 90.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 8 | 90.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 13 | 91.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 58 | 91.51 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 76 | 91.70 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 79 | 91.73 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 84 | 91.75 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 90 | 91.80 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 97 | 91.82 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 110 | 91.86 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 131 | 91.97 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 135 | 91.98 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 139 | 92.00 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 140 | 92.00 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 145 | 92.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 151 | 92.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 162 | 92.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 163 | 92.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 165 | 92.07 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 172 | 92.10 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 175 | 92.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 189 | 92.17 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 191 | 92.17 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 199 | 92.20 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 202 | 92.20 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 204 | 92.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 238 | 92.30 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 241 | 92.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 258 | 92.35 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 272 | 92.37 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 310 | 92.44 | wind | 3 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 316 | 92.46 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 348 | 92.56 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 389 | 92.69 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 416 | 92.75 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 418 | 92.75 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 444 | 92.79 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 448 | 92.80 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 487 | 92.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 536 | 93.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 576 | 93.07 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 605 | 93.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 675 | 93.22 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 10 |
| 704 | 93.26 | atmosphere | 995 | 43200 | > th | dose independent | sin | 7 | NA |
| 709 | 93.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 21 |
| 727 | 93.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 728 | 93.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 766 | 93.33 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 780 | 93.35 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 861 | 93.41 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 862 | 93.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 878 | 93.42 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 888 | 93.44 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 897 | 93.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 911 | 93.46 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 931 | 93.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 950 | 93.50 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 4 |