Os01g0679700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L37a.
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Os01g0679700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L37a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.52 | 0.366 | 13.7 | 0.263 | 0.55 | 0.25 | 0.653 | -1.5 | -0.0278 | 20 | 20 | 4348 | -- | -- |
| 62.58 | 0.368 | 13.6 | 0.507 | 0.537 | 0.593 | 0.528 | -- | 0.0408 | 19.7 | 19.6 | 2902 | -- | -- |
| 61.77 | 0.366 | 13.7 | 0.24 | 0.551 | 0.264 | -- | -1.5 | -0.0282 | 19.9 | 19.98 | 4354 | -- | -- |
| 63.7 | 0.372 | 13.6 | 0.197 | 0.552 | 0.707 | -- | -- | -0.036 | 19.7 | 18 | 14442 | -- | -- |
| 78.17 | 0.412 | 13.7 | 0.246 | -- | 0.29 | -- | -1.42 | -0.0389 | -- | 20.21 | 3700 | -- | -- |
| 68.39 | 0.388 | 13.6 | 0.818 | 0.542 | -- | 0.735 | -- | 0.171 | 20.1 | -- | -- | -- | -- |
| 70 | 0.392 | 13.6 | 0.798 | 0.543 | -- | -- | -- | 0.172 | 20 | -- | -- | -- | -- |
| 79.25 | 0.415 | 13.6 | 0.196 | -- | 0.771 | -- | -- | -0.0176 | -- | 17.4 | 15036 | -- | -- |
| 64.73 | 0.375 | 13.6 | -- | 0.544 | 0.768 | -- | -- | -0.0437 | 19.6 | 17.2 | 24285 | -- | -- |
| 86.09 | 0.434 | 13.6 | 0.792 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 86.76 | 0.436 | 13.6 | -- | 0.538 | -- | -- | -- | 0.0836 | 20.1 | -- | -- | -- | -- |
| 79.83 | 0.416 | 13.6 | -- | -- | 0.897 | -- | -- | -0.0341 | -- | 17.4 | 15036 | -- | -- |
| 102.63 | 0.473 | 13.6 | -- | -- | -- | -- | -- | 0.0775 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.03 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 9 | 57.42 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 10 | 57.47 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 11 | 57.51 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 14 | 57.99 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 16 | 58.07 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 22 | 58.30 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 28 | 58.64 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 38 | 59.05 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 40 | 59.15 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 44 | 59.22 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 46 | 59.28 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 48 | 59.29 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 60 | 59.37 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 75 | 59.44 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 76 | 59.46 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 80 | 59.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 86 | 59.52 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 88 | 59.52 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 98 | 59.59 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 99 | 59.59 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 103 | 59.60 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 106 | 59.60 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 113 | 59.62 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 122 | 59.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 140 | 59.72 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 160 | 59.75 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 174 | 59.77 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 15 |
| 180 | 59.79 | temperature | 20.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 182 | 59.79 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 189 | 59.81 | temperature | 20.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 194 | 59.82 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 240 | 59.93 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 249 | 59.93 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 274 | 59.98 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 289 | 59.99 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 293 | 60.00 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 315 | 60.02 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 318 | 60.02 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 7 |
| 339 | 60.05 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 376 | 60.11 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 417 | 60.17 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 422 | 60.17 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 423 | 60.17 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 428 | 60.18 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 445 | 60.21 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 460 | 60.22 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 474 | 60.25 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 484 | 60.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 487 | 60.27 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 489 | 60.27 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 497 | 60.27 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 509 | 60.29 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 532 | 60.30 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 577 | 60.33 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 580 | 60.33 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 591 | 60.34 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 595 | 60.34 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 600 | 60.35 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 603 | 60.35 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 608 | 60.36 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 613 | 60.36 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 638 | 60.39 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 641 | 60.39 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 643 | 60.39 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 644 | 60.39 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 646 | 60.39 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 652 | 60.40 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 658 | 60.40 | wind | 7.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 659 | 60.40 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 670 | 60.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 677 | 60.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 686 | 60.43 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 692 | 60.43 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 695 | 60.44 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 697 | 60.44 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 700 | 60.44 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 701 | 60.44 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 705 | 60.44 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 712 | 60.45 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 713 | 60.45 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 728 | 60.46 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 747 | 60.46 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 21 |
| 755 | 60.47 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 762 | 60.47 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 773 | 60.48 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 789 | 60.49 | wind | 1.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 822 | 60.51 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 827 | 60.52 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 839 | 60.52 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 842 | 60.52 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 852 | 60.53 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 853 | 60.53 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |
| 873 | 60.53 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 876 | 60.53 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 882 | 60.53 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 895 | 60.54 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 931 | 60.56 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 952 | 60.57 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 973 | 60.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 982 | 60.58 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 983 | 60.58 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 998 | 60.59 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 23 |