BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0556800 Os05g0556800|AK109887
(394 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0556800 Protein of unknown function DUF250 domain cont... 425 e-119
Os01g0680200 Protein of unknown function DUF6, transmembran... 274 1e-73
Os01g0504100 Protein of unknown function DUF6, transmembran... 155 7e-38
>Os05g0556800 Protein of unknown function DUF250 domain containing protein
Length = 394
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/343 (67%), Positives = 232/343 (67%)
Query: 52 RFYFTHGGRNRWVVTLVQSAGFPLLVAGALAGGRPASAPRPFTWLSRRFLAVCLVIGALM 111
RFYFTHGGRNRWVVTLVQSAGFPLLVAGALAGGRPASAPRPFTWLSRRFLAVCLVIGALM
Sbjct: 52 RFYFTHGGRNRWVVTLVQSAGFPLLVAGALAGGRPASAPRPFTWLSRRFLAVCLVIGALM 111
Query: 112 GANNLLFAYXXXXXXXXXXXXXXXXXXXXXXXXAVVIVRHPXXXXXXXXXXXXXXXXXXX 171
GANNLLFAY AVVIVRHP
Sbjct: 112 GANNLLFAYSTSLLPVSTSSLLLSTQLAFTLVLAVVIVRHPVTFVNLNAVVLLTLSSVLL 171
Query: 172 XXRSXXXXXXXXXXXXXXXRKSYLVGFVVTLGAAGLFSAYLPVMELVYREAVSGGFXXXX 231
RS RKSYLVGFVVTLGAAGLFSAYLPVMELVYREAVSGGF
Sbjct: 172 ALRSGDSGETAEGGVGGGGRKSYLVGFVVTLGAAGLFSAYLPVMELVYREAVSGGFVLAV 231
Query: 232 XXXXXXXXXXXXXXXXXXXXXXXXXDDVSGWVDGGSSPAVYWAVVATLVLTWQACFMGTA 291
DDVSGWVDGGSSPAVYWAVVATLVLTWQACFMGTA
Sbjct: 232 EVQAVMQAMASLIAAVGLAASGGVADDVSGWVDGGSSPAVYWAVVATLVLTWQACFMGTA 291
Query: 292 GVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALATALCAWGFSSYLYGEYXXX 351
GVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALATALCAWGFSSYLYGEY
Sbjct: 292 GVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALATALCAWGFSSYLYGEYAKA 351
Query: 352 XXXXXXXXXXXXXXXXXXXDGEGSVHKSLTGGGAAGGHVETAV 394
DGEGSVHKSLTGGGAAGGHVETAV
Sbjct: 352 KKVAAAAAVAAAEEEESASDGEGSVHKSLTGGGAAGGHVETAV 394
>Os01g0680200 Protein of unknown function DUF6, transmembrane domain containing
protein
Length = 387
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/350 (46%), Positives = 181/350 (51%), Gaps = 36/350 (10%)
Query: 52 RFYFTHGGRNRWVVTLVQSAGFPLLVAGALAGGRPASAPRPFTWLSRRFLAVCLVIGALM 111
R+YF HGG NRWV TLVQS GFP L+ AG P S PRPF W +RR LA C+VIG LM
Sbjct: 56 RYYFAHGGHNRWVATLVQSVGFPFLLVPVYAGRSP-SQPRPFAWFTRRLLAACVVIGVLM 114
Query: 112 GANNLLFAYXXXXXXXXXXXXXXXXXXXXXXXXAVVIVRHPXXXXXXXXXXXXXXXXXXX 171
G NNLLF+Y A +IVRHP
Sbjct: 115 GVNNLLFSYSSSYLPVSTSSLLLSTQLAFTLVLAAIIVRHPLNFSNLNAVVLLTLSSVLI 174
Query: 172 XXRSXXXXXXXXXXXXXXXRKSYLVGFVVTLGAAGLFSAYLPVMELVYREAVSGGFXXXX 231
RS R Y VGF VTLGAAGLF+AYLPVMELVYR+AVSGGF
Sbjct: 175 ALRSSDSGEQPGGGS----RARYFVGFAVTLGAAGLFAAYLPVMELVYRKAVSGGFRMAV 230
Query: 232 XXXXXXXXXXXXXXXXXXXXXXXXXDDVSGWVDGGSSPAVYWAVVATLVLTWQACFMGTA 291
++++ W SPA YWAV+A LV TWQAC MGTA
Sbjct: 231 EVQVIMQAAATALAVAGLAAAGGWKEELARW---DLSPAAYWAVLAALVATWQACLMGTA 287
Query: 292 GVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALATALCAWGFSSYLYGEYXXX 351
G++YLTSSLHSGVCM AVLT NV+GGV VF DPFGA+KA+AT LC WGFSSYLYGEY
Sbjct: 288 GMVYLTSSLHSGVCMTAVLTANVIGGVVVFRDPFGADKAVATVLCVWGFSSYLYGEY--- 344
Query: 352 XXXXXXXXXXXXXXXXXXXDGEGSV------------HKSLTGGGAAGGH 389
DG+G V K TGGGAA G
Sbjct: 345 -------------TTQKKVDGDGKVAAASSAAAAASADKIPTGGGAAEGD 381
>Os01g0504100 Protein of unknown function DUF6, transmembrane domain containing
protein
Length = 379
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 142/300 (47%), Gaps = 10/300 (3%)
Query: 52 RFYFTHGGRNRWVVTLVQSAGFPLLVAGALAGGRPASAPRPFTWLSRRFLAVCLVIGALM 111
RFYF HGG +RW+ TLVQSAGFP L+ + RPAS RPF + R + C+++G +M
Sbjct: 68 RFYFAHGGADRWLATLVQSAGFPALLLPLMCARRPAS--RPFAGFTPRLVMYCVLLGLVM 125
Query: 112 GANNLLFAYXXXXXXXXXXXXXXXXXXXXXXXXAVVIVRHPXXXXXXXXXXXXXXXXXXX 171
G NNLL++ A +VR P
Sbjct: 126 GLNNLLYSCGTSYLPVSTTALLLSMQLAFTLALAAALVRVPLSFANFNAVVLLTLSSLLL 185
Query: 172 XXRSXXXXXXXXXXXXXXXRKSYLVGFVVTLGAAGLFSAYLPVMELVYREAVSGGFXXXX 231
R YLVG TLGAA LF+ YLP ELVYR GF
Sbjct: 186 ALRHGAGGGGGGADATS---PDYLVGVAATLGAALLFALYLPAAELVYRHGGVTGFRMVV 242
Query: 232 XXXXXXXXXXXXXXXXXXXXXXXXX---DDVSGWVDGGSSPAVYWAVVATLVLTWQACFM 288
D V D SPA Y+AVV VL+WQ CF+
Sbjct: 243 EAQVIMEAVATAVGAAGMVSSAGGKWPWDGVEATWD--LSPAAYYAVVGAAVLSWQLCFL 300
Query: 289 GTAGVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALATALCAWGFSSYLYGEY 348
GTAG ++LT+SLH G+CM A+L +NV GGV VFGD FG EKA+A LC W FSSY+YGEY
Sbjct: 301 GTAGTVFLTTSLHGGICMTALLAVNVAGGVVVFGDEFGPEKAVAMLLCLWAFSSYVYGEY 360
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,939,011
Number of extensions: 298281
Number of successful extensions: 1154
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1148
Number of HSP's successfully gapped: 4
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)