BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0555300 Os05g0555300|AK062890
         (185 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0555300  Ferredoxin domain containing protein                285   2e-77
Os07g0489800  Ferredoxin domain containing protein                133   8e-32

>Os05g0555300 Ferredoxin domain containing protein
          Length = 185

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/185 (83%), Positives = 154/185 (83%)

Query: 1   MXXXXXXXXXLFSLAIPSSRVVSTRGHRKASSGSGPFRAARIRCXXXXXXXXXXXXXXXX 60
           M         LFSLAIPSSRVVSTRGHRKASSGSGPFRAARIRC                
Sbjct: 1   MAATSSTSTALFSLAIPSSRVVSTRGHRKASSGSGPFRAARIRCSNAASPNASAGAASAE 60

Query: 61  XXXXXXKPQIDLEFVGPKADADGSFPVDRAAAGSGEKLLRDVMVENKIELYAAYGKVMNC 120
                 KPQIDLEFVGPKADADGSFPVDRAAAGSGEKLLRDVMVENKIELYAAYGKVMNC
Sbjct: 61  EAAPPPKPQIDLEFVGPKADADGSFPVDRAAAGSGEKLLRDVMVENKIELYAAYGKVMNC 120

Query: 121 GGGGSCGTCIVEIVDGKELLNERTNTENRYLKKKPESWRLACQTIVGNKENSGKVVVQRL 180
           GGGGSCGTCIVEIVDGKELLNERTNTENRYLKKKPESWRLACQTIVGNKENSGKVVVQRL
Sbjct: 121 GGGGSCGTCIVEIVDGKELLNERTNTENRYLKKKPESWRLACQTIVGNKENSGKVVVQRL 180

Query: 181 PQWKK 185
           PQWKK
Sbjct: 181 PQWKK 185



>Os07g0489800 Ferredoxin domain containing protein
          Length = 210

 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 86/118 (72%), Gaps = 2/118 (1%)

Query: 68  PQIDLEFVGPKADADGSFPVDRAAAGSGEKLLRDVMVENKIELYAAYGKVM-NCGGGGSC 126
           P +D  FV P+   DG+  V    A  G+KL RD+M++N I+LY  Y K++ NC GGG C
Sbjct: 88  PSVDFAFVAPRLLPDGTPDVHYRTACGGQKL-RDIMLDNYIDLYGPYDKLLLNCEGGGEC 146

Query: 127 GTCIVEIVDGKELLNERTNTENRYLKKKPESWRLACQTIVGNKENSGKVVVQRLPQWK 184
           GTCIVE+V+G ELL+ +T+ E   LK+KP++WRLACQ  VGN +++G++V+Q+LP+WK
Sbjct: 147 GTCIVEVVEGGELLSPKTDVEKELLKRKPKTWRLACQATVGNPDSTGQMVIQQLPEWK 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,931,500
Number of extensions: 229798
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 698
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)