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Os07g0489800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ferredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0382) R2 : 0.94
β1 : -1.6 (0.139) R2dD : 0.0182 R2D : 0.0136
β2 : 3.16 (0.145) R2dC : 0.145 R2C : 0.505
β3 : -5.07 (0.14) R2dE : 0.401 R2E : 0.768
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.584 (0.081) R2dN8 : 0.00909 R2N8 : 0.00747
σ : 0.708
deviance : 231.34
__
_____
C
peak time of C : 20.4
E
wheather : temperature
threshold : 19.94
memory length : 261
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.22
open length of G : 6.78

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.28 0.7 13 -1.67 3.04 -5.14 -0.561 -2.16 -0.579 20.3 19.95 266 4.08 6.93
229.85 0.706 13 -1.57 3.09 -5.1 0.786 -- -0.577 20.3 19.8 266 4.12 6.88
221.94 0.694 13 -1.64 3.14 -5.08 -- -1.76 -0.591 20.3 19.97 266 4.15 6.85
231.34 0.708 13 -1.6 3.16 -5.07 -- -- -0.584 20.4 19.94 261 4.22 6.78
342.24 0.862 12.9 -0.987 -- -6.94 -- -0.293 -0.527 -- 19.3 263 3.25 7.95
667.25 1.21 13.2 -1.9 7.19 -- 1.84 -- -0.823 21.4 -- -- -- --
679.62 1.22 13.2 -1.97 7.19 -- -- -- -0.825 21.4 -- -- -- --
342.28 0.862 12.9 -1.15 -- -7.09 -- -- -0.49 -- 19.2 263 3.25 7.83
296.9 0.803 13 -- 3.19 -5.13 -- -- -0.395 20.3 20.1 265 4.23 6.75
3703.56 2.84 13 -1.93 -- -- -- -- -0.85 -- -- -- -- --
782.01 1.31 13.2 -- 7.18 -- -- -- -0.605 21.4 -- -- -- --
385.99 0.915 12.9 -- -- -7.12 -- -- -0.36 -- 19.2 268 3.22 7.85
3801.85 2.88 13 -- -- -- -- -- -0.636 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 224.31 temperature 20.0 270 > th dose independent rect. 4 7
3 256.69 temperature 10.0 270 > th dose dependent rect. 4 7
27 329.17 temperature 15.0 10 > th dose dependent rect. 6 6
36 338.43 precipitation 0.1 270 < th dose independent rect. 4 7
37 338.43 precipitation 0.1 270 < th dose dependent rect. 4 7
39 339.91 wind 1.0 270 > th dose independent rect. 10 7
41 340.81 atmosphere 995.0 270 > th dose independent rect. 4 7
42 340.81 atmosphere 1015.0 270 < th dose independent rect. 4 7
43 340.81 temperature 10.0 270 > th dose independent rect. 11 17
44 340.97 wind 9.0 270 < th dose independent rect. 4 7
47 341.56 wind 9.0 270 < th dose independent rect. 11 17
51 343.73 temperature 10.0 270 > th dose independent rect. 10 7
52 343.73 atmosphere 1015.0 270 < th dose independent rect. 10 7
53 343.73 temperature 10.0 270 > th dose independent rect. 17 17
54 343.76 radiation 1.0 270 < th dose dependent rect. 22 15
55 344.05 wind 9.0 270 < th dose independent rect. 10 7
57 344.57 wind 9.0 270 < th dose independent rect. 17 17
58 344.66 precipitation 0.1 270 < th dose independent rect. 11 17
59 344.66 precipitation 0.1 270 < th dose dependent rect. 11 17
61 344.87 precipitation 0.1 270 < th dose independent rect. 10 7
62 344.87 precipitation 0.1 270 < th dose dependent rect. 10 7
66 345.41 atmosphere 995.0 270 > th dose independent rect. 17 17
68 345.72 humidity 50.0 270 > th dose independent rect. 4 7
75 347.33 radiation 1.0 270 < th dose dependent rect. 22 9
78 347.53 humidity 50.0 270 > th dose independent rect. 17 17
93 350.36 radiation 1.0 270 < th dose independent rect. 22 9
96 350.99 radiation 1.0 270 < th dose dependent sin 8 NA
103 352.15 radiation 1.0 270 > th dose independent rect. 18 17
109 353.70 precipitation 0.1 270 < th dose independent rect. 17 17
110 353.70 precipitation 0.1 270 < th dose dependent rect. 17 17
112 354.48 radiation 1.0 270 > th dose independent rect. 5 6
114 354.58 radiation 1.0 270 < th dose independent rect. 22 15
130 355.91 radiation 20.0 270 < th dose dependent rect. 22 8
138 356.80 temperature 10.0 270 > th dose independent rect. 22 8
139 356.80 temperature 30.0 270 < th dose independent rect. 22 8
140 356.80 humidity 50.0 270 > th dose independent rect. 22 8
143 356.80 atmosphere 995.0 270 > th dose independent rect. 22 8
144 356.80 radiation 20.0 270 < th dose independent rect. 22 8
147 356.80 temperature 10.0 270 > th dose independent rect. 6 16
148 356.81 wind 9.0 270 < th dose independent rect. 22 8
183 361.49 precipitation 0.1 270 < th dose independent rect. 22 8
184 361.49 precipitation 0.1 270 < th dose dependent rect. 22 8
189 361.98 radiation 1.0 270 > th dose independent rect. 10 7
198 364.47 wind 9.0 270 < th dose independent rect. 6 16
202 365.50 radiation 30.0 270 < th dose independent rect. 15 9
203 365.69 atmosphere 995.0 270 > th dose independent rect. 10 7
211 366.76 temperature 30.0 270 < th dose independent rect. 5 6
215 367.04 temperature 10.0 270 > th dose independent rect. 15 9
216 367.04 temperature 10.0 270 > th dose independent rect. 24 15
217 367.07 atmosphere 1015.0 270 < th dose independent rect. 24 15
220 367.21 radiation 40.0 270 < th dose independent rect. 17 17
225 367.41 wind 9.0 270 < th dose dependent rect. 5 6
231 367.58 radiation 1.0 270 < th dose independent sin 9 NA
244 368.41 radiation 1.0 270 > th dose independent sin 9 NA
250 369.37 wind 9.0 270 < th dose independent rect. 24 15
276 370.91 temperature 10.0 270 > th dose independent rect. 16 7
277 370.91 radiation 40.0 270 < th dose independent rect. 16 7
278 370.91 temperature 10.0 270 > th dose independent rect. 23 17
279 370.99 atmosphere 995.0 270 > th dose independent rect. 24 15
285 372.12 radiation 40.0 270 < th dose dependent rect. 15 8
286 372.23 wind 9.0 270 < th dose independent rect. 23 17
289 372.75 wind 9.0 270 < th dose independent rect. 15 9
294 373.11 precipitation 0.1 270 < th dose independent rect. 6 16
295 373.11 precipitation 0.1 270 < th dose dependent rect. 6 16
296 373.14 atmosphere 1015.0 270 < th dose independent rect. 6 15
297 373.17 wind 1.0 270 > th dose independent rect. 11 18
300 373.23 wind 9.0 270 < th dose independent rect. 16 7
302 373.46 atmosphere 1015.0 270 < th dose independent rect. 23 17
320 376.09 atmosphere 1015.0 270 < th dose independent rect. 22 8
323 376.55 radiation 40.0 270 < th dose independent rect. 5 6
332 377.15 precipitation 0.1 270 < th dose independent rect. 24 15
333 377.15 precipitation 0.1 270 < th dose dependent rect. 24 15
361 379.20 precipitation 0.1 270 < th dose independent rect. 23 17
362 379.20 precipitation 0.1 270 < th dose dependent rect. 23 17
376 380.26 atmosphere 995.0 270 > th dose independent rect. 23 17
383 380.57 atmosphere 995.0 270 > th dose independent rect. 16 7
384 380.87 radiation 40.0 270 < th dose independent rect. 6 17
390 381.71 atmosphere 995.0 270 > th dose independent rect. 11 17
392 381.75 wind 1.0 270 > th dose independent rect. 16 7
440 384.88 precipitation 0.1 270 < th dose independent rect. 6 4
441 384.88 precipitation 0.1 270 < th dose dependent rect. 6 4
442 384.94 wind 9.0 270 < th dose independent rect. 6 4
446 385.12 atmosphere 995.0 270 > th dose independent rect. 6 4
447 385.12 atmosphere 1015.0 270 < th dose independent rect. 6 4
448 385.12 wind 9.0 270 < th dose independent rect. 10 20
449 385.12 temperature 10.0 270 > th dose independent rect. 10 20
452 385.39 temperature 10.0 270 > th dose dependent rect. 18 16
458 385.89 humidity 50.0 270 > th dose independent rect. 6 4
459 385.90 precipitation 0.1 270 < th dose independent rect. 16 7
460 385.90 precipitation 0.1 270 < th dose dependent rect. 16 7
461 386.14 precipitation 0.1 270 < th dose independent rect. 10 20
462 386.14 precipitation 0.1 270 < th dose dependent rect. 10 20
469 386.71 wind 9.0 270 < th dose dependent rect. 6 4
486 387.86 radiation 1.0 270 > th dose independent rect. 10 19
522 389.22 temperature 30.0 270 < th dose independent rect. 6 4
527 389.57 precipitation 0.1 270 < th dose independent rect. 15 9
528 389.57 precipitation 0.1 270 < th dose dependent rect. 15 9
566 391.81 temperature 10.0 270 > th dose dependent rect. 11 5
578 392.75 atmosphere 995.0 270 > th dose independent rect. 6 16
582 392.92 radiation 40.0 270 < th dose independent rect. 6 4
583 392.93 humidity 50.0 270 > th dose independent rect. 24 15
584 393.03 humidity 90.0 270 < th dose independent rect. 11 6
587 393.29 temperature 30.0 270 < th dose independent rect. 17 17
612 395.59 atmosphere 1015.0 270 < th dose independent rect. 11 17
616 395.84 humidity 50.0 270 > th dose independent rect. 11 5
645 396.70 wind 1.0 270 > th dose independent rect. 5 6
667 398.63 humidity 50.0 270 > th dose independent rect. 23 17
724 401.41 temperature 10.0 10 > th dose dependent rect. 19 17
731 401.82 humidity 90.0 90 < th dose independent rect. 6 6
745 402.45 wind 7.0 270 < th dose independent rect. 7 2
747 402.48 temperature 10.0 270 > th dose independent rect. 7 2
749 402.48 humidity 50.0 270 > th dose independent rect. 7 2
750 402.48 atmosphere 995.0 270 > th dose independent rect. 7 2
751 402.48 atmosphere 1015.0 270 < th dose independent rect. 7 2
752 402.48 temperature 10.0 270 > th dose independent rect. 9 22
755 402.76 precipitation 0.1 270 < th dose independent rect. 7 2
756 402.76 precipitation 0.1 270 < th dose dependent rect. 7 2
762 403.26 temperature 30.0 270 < th dose independent rect. 7 2
778 403.40 radiation 40.0 270 < th dose independent rect. 7 2
792 404.20 wind 9.0 270 < th dose dependent rect. 7 2
796 404.36 wind 9.0 270 < th dose independent rect. 9 22
820 404.59 wind 1.0 270 > th dose independent rect. 6 4
940 409.04 wind 1.0 270 > th dose independent rect. 22 8
944 409.20 humidity 50.0 270 > th dose independent rect. 16 7
978 410.98 temperature 30.0 10 < th dose dependent rect. 24 8