BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0553700 Os05g0553700|AK103396
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0553700  Similar to Syntaxin 71 (AtSYP71)                    653   0.0  
Os09g0359700  Target SNARE coiled-coil region domain contain...   211   7e-55

>Os05g0553700 Similar to Syntaxin 71 (AtSYP71)
          Length = 318

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSIDADINECVEKAEAAKQE 60
           MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSIDADINECVEKAEAAKQE
Sbjct: 1   MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSIDADINECVEKAEAAKQE 60

Query: 61  KNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 120
           KNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS
Sbjct: 61  KNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 120

Query: 121 IPDGSSSAKKNGTWGASGSRTGGAIKFDTSDGNFDDEYFKGTEESNQFRREYEMRKMKQD 180
           IPDGSSSAKKNGTWGASGSRTGGAIKFDTSDGNFDDEYFKGTEESNQFRREYEMRKMKQD
Sbjct: 121 IPDGSSSAKKNGTWGASGSRTGGAIKFDTSDGNFDDEYFKGTEESNQFRREYEMRKMKQD 180

Query: 181 EGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLR 240
           EGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLR
Sbjct: 181 EGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLR 240

Query: 241 SSRNFCIDIVLLCVILGIAAYLYNVLKKVRPDCAMDLFSTSSGDGWMSFDVSTSCSLYFY 300
           SSRNFCIDIVLLCVILGIAAYLYNVLKKVRPDCAMDLFSTSSGDGWMSFDVSTSCSLYFY
Sbjct: 241 SSRNFCIDIVLLCVILGIAAYLYNVLKKVRPDCAMDLFSTSSGDGWMSFDVSTSCSLYFY 300

Query: 301 LICVIVVWCSSGTCEHPC 318
           LICVIVVWCSSGTCEHPC
Sbjct: 301 LICVIVVWCSSGTCEHPC 318



>Os09g0359700 Target SNARE coiled-coil region domain containing protein
          Length = 217

 Score =  211 bits (536), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 131/240 (54%), Positives = 164/240 (68%), Gaps = 29/240 (12%)

Query: 1   MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSIDADINECVEKAEAAKQE 60
           MS+ID+L RVD+ICKKYDKYD ++    N A  DPF+RLY ++DADI+  VE++E A  E
Sbjct: 1   MSMIDVLIRVDAICKKYDKYDADKHR--NGAAGDPFSRLYAAVDADIDAAVERSERAATE 58

Query: 61  KNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 120
            NRA  VALNA++RRTKA+L EE + KL++LA KKVKGL+ EE A R DLV ALP RIQS
Sbjct: 59  TNRAAAVALNADVRRTKARLTEE-VVKLRKLAAKKVKGLSPEE-ALRGDLVLALPHRIQS 116

Query: 121 IPDGSSSAKKNGTWGASGSRTGGAIKFDTSDGNFDDEYFKGTEESNQFRREYEMRKMKQD 180
           IPDG   A     +G    R G  IKFD+S   F                   +  +K D
Sbjct: 117 IPDGGGGAADQ--YGGGNVRPG--IKFDSS--GF-------------------VVFLKLD 151

Query: 181 EGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLR 240
           EGL+ I EGL+TLK++A DMNEEL+RQ+P+MDE+D KVD++N DL+ TNVRLKETV Q R
Sbjct: 152 EGLEFISEGLDTLKSLAEDMNEELNRQMPMMDEIDNKVDKSNEDLRKTNVRLKETVNQER 211



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,323,796
Number of extensions: 431131
Number of successful extensions: 1668
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1664
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)