Os05g0553700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Syntaxin 71 (AtSYP71).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0553700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Syntaxin 71 (AtSYP71).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.43 | 0.302 | 11.4 | -1.54 | 0.694 | -1.53 | -0.181 | 0.832 | -0.185 | 23.2 | 24.85 | 1497 | -- | -- |
| 41.91 | 0.301 | 11.4 | -1.39 | 0.689 | -1.66 | -0.166 | -- | -0.139 | 23.2 | 23.98 | 1497 | -- | -- |
| 41.57 | 0.3 | 11.4 | -1.53 | 0.695 | -1.53 | -- | 0.832 | -0.184 | 23.1 | 24.84 | 1497 | -- | -- |
| 42.04 | 0.302 | 11.4 | -1.39 | 0.69 | -1.68 | -- | -- | -0.139 | 23.1 | 23.92 | 1490 | -- | -- |
| 53.25 | 0.34 | 11.4 | -1.68 | -- | -1.78 | -- | 1.5 | -0.237 | -- | 30.44 | 878 | -- | -- |
| 76.04 | 0.409 | 11.3 | -0.903 | 0.705 | -- | -0.154 | -- | 0.179 | 23.4 | -- | -- | -- | -- |
| 76.14 | 0.409 | 11.3 | -0.897 | 0.706 | -- | -- | -- | 0.179 | 23.3 | -- | -- | -- | -- |
| 55.21 | 0.346 | 11.4 | -1.39 | -- | -1.79 | -- | -- | -0.183 | -- | 29.38 | 870 | -- | -- |
| 82.1 | 0.424 | 11.3 | -- | 0.848 | -0.999 | -- | -- | 0.147 | 23.5 | 23.92 | 1490 | -- | -- |
| 107.32 | 0.484 | 11.3 | -0.879 | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
| 97.33 | 0.461 | 11.3 | -- | 0.697 | -- | -- | -- | 0.279 | 23.2 | -- | -- | -- | -- |
| 100 | 0.466 | 11.3 | -- | -- | -1.22 | -- | -- | 0.0814 | -- | 30.1 | 831 | -- | -- |
| 127.68 | 0.527 | 11.3 | -- | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 2 | 39.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 6 | 39.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 63 | 40.05 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 133 | 40.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 138 | 40.26 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 312 | 40.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 378 | 40.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 394 | 40.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 569 | 41.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 696 | 41.53 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 776 | 41.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 834 | 41.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 835 | 41.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 845 | 41.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |