BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0553700 Os05g0553700|AK103396
(318 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09740.1 | chr3:2989615-2991354 FORWARD LENGTH=267 379 e-105
AT3G45280.1 | chr3:16611445-16613304 REVERSE LENGTH=268 335 1e-92
AT3G61450.2 | chr3:22738455-22739953 FORWARD LENGTH=265 300 8e-82
AT1G79590.1 | chr1:29947064-29948304 FORWARD LENGTH=234 50 2e-06
>AT3G09740.1 | chr3:2989615-2991354 FORWARD LENGTH=267
Length = 266
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 226/268 (84%), Gaps = 3/268 (1%)
Query: 1 MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSIDADINECVEKAEAAKQE 60
M+VIDILTRVDSICKKYDKYDV++ AN++G+D FARLYG+ + I +EKAE +E
Sbjct: 1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60
Query: 61 KNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 120
KNRA VA+NAEIRRTKA+L EE +PKLQRLA+K+VKGLT EELA R+DLV ALP RI++
Sbjct: 61 KNRAAAVAMNAEIRRTKARLSEE-VPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEA 119
Query: 121 IPDGSSSAKKNGT-WGASGSRTGGAIKFDTSDGNFDDEYFKGTEESNQFRREYEMRKMKQ 179
IPDG++ K+ + W S + + IKFD SDG FDD+YF+ + ES+QFR+EYEMRK+KQ
Sbjct: 120 IPDGTAGGPKSTSAWTPSSTTSRPDIKFD-SDGRFDDDYFQESNESSQFRQEYEMRKIKQ 178
Query: 180 DEGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQL 239
++GLD+I EGL+ LKNMASDMNEELDRQVPLMDE+D KVDRA +DLKNTNVRLK+TV QL
Sbjct: 179 EQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQL 238
Query: 240 RSSRNFCIDIVLLCVILGIAAYLYNVLK 267
RSSRNFCIDIVLLC++LGIAAYLYNVLK
Sbjct: 239 RSSRNFCIDIVLLCIVLGIAAYLYNVLK 266
>AT3G45280.1 | chr3:16611445-16613304 REVERSE LENGTH=268
Length = 267
Score = 335 bits (860), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/268 (61%), Positives = 210/268 (78%), Gaps = 4/268 (1%)
Query: 1 MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSIDADINECVEKAEAAKQE 60
M VIDI+ RVD ICKKYDKYD+++ +G+D F+RL+ SID+DI + KAE A E
Sbjct: 1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60
Query: 61 KNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 120
KNRA VA+NAE+RRTKA+L E D+ KLQ+LA+KK+KGLT+EE +R DLV AL DR+Q+
Sbjct: 61 KNRAAAVAMNAEVRRTKARLAE-DVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQA 119
Query: 121 IPDGSSSAKK--NGTWGASGSRTGGAIKFDTSDGNFDDEYFKGTEESNQFRREYEMRKMK 178
IPDG+ K N WG + S IKFD S+ + DD +F+ +EES+QFR+EYEMR+ K
Sbjct: 120 IPDGNEHGAKQANSDWGGA-SAPNKNIKFDMSEEDMDDGFFQQSEESSQFRQEYEMRRKK 178
Query: 179 QDEGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQ 238
QDEGLDII EGL+ LKN+A DMNEELD+QVPLM+EM+ KVD A +DLKNTNVRLK+ ++Q
Sbjct: 179 QDEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRLKKQLVQ 238
Query: 239 LRSSRNFCIDIVLLCVILGIAAYLYNVL 266
+RSSRNFCIDI+LLCVILGI +Y+YN L
Sbjct: 239 MRSSRNFCIDIILLCVILGIVSYIYNAL 266
>AT3G61450.2 | chr3:22738455-22739953 FORWARD LENGTH=265
Length = 264
Score = 300 bits (767), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 164/269 (60%), Positives = 214/269 (79%), Gaps = 7/269 (2%)
Query: 1 MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSIDADINECVEKAEAAKQE 60
M VID++TRVDSICKKY+KYD+ R ANV+G+D F+RLY +++ + ++K E E
Sbjct: 1 MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60
Query: 61 KNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 120
N+A VA+NAEIRRTKA+L+E +PKLQRL+LKKVKGL+KEEL R+DLV +L D+I++
Sbjct: 61 TNKAKAVAMNAEIRRTKARLLE-GIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEA 119
Query: 121 IPDGSSSAKKNGTWGASGSRTGGAIKFDT--SDGNFDDEYFKGTEESNQFRREYEMRKMK 178
IP+ SSA G W AS S + I+FDT SD EYF+ T ES+QF++EYEM+++K
Sbjct: 120 IPE--SSAPVVGGWEASTSYSN--IRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRIK 175
Query: 179 QDEGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQ 238
QD+GLD I EGL+TLKNMA D+NEELDRQ PLMDE+D K+D+A TDLK+TNVRLK+TV +
Sbjct: 176 QDQGLDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKIDKAATDLKSTNVRLKDTVTK 235
Query: 239 LRSSRNFCIDIVLLCVILGIAAYLYNVLK 267
LRSSRNFCIDI+LLC++LGIAA++YN +K
Sbjct: 236 LRSSRNFCIDIILLCILLGIAAFIYNSVK 264
>AT1G79590.1 | chr1:29947064-29948304 FORWARD LENGTH=234
Length = 233
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 117/247 (47%), Gaps = 45/247 (18%)
Query: 31 AGEDPFARLYGSIDADINECVEKAE---AAKQEKNRATVVALNAEIR----RTKAKLVEE 83
+ DP+ R Y NE ++ +E E+N + + +A+ R R K ++
Sbjct: 3 SSSDPWMREY-------NEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGT 55
Query: 84 DLPKLQRLALKKVKG---LTKEELATRSDLVAAL---PDRIQSIPDGSSSAKKNGTWGAS 137
L LQ L L KV G ++++E+ R D+V L +++ S + S+ A ++ +G
Sbjct: 56 RLDSLQSL-LVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFG-- 112
Query: 138 GSRTGGAIKFDTSDGNFDDEYFKGTEESNQ----FRREYEMRKMKQDEGLDIIGEGLETL 193
+D DD + + NQ F+R+ MR+ QDEGL+ + E + +
Sbjct: 113 ------------TDLKPDDAINRVSGMDNQGIVVFQRQV-MRE--QDEGLEKLEETVMST 157
Query: 194 KNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLRSSRNFCIDIVLLC 253
K++A +NEEL Q L+D++D VD ++ L+ K L +S ++ C + +L
Sbjct: 158 KHIALAVNEELTLQTRLIDDLDYDVDITDSRLRRVQ---KSLALMNKSMKSGCSCMSMLL 214
Query: 254 VILGIAA 260
+LGI
Sbjct: 215 SVLGIVG 221
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,912,686
Number of extensions: 299138
Number of successful extensions: 1409
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1406
Number of HSP's successfully gapped: 7
Length of query: 318
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,392,385
Effective search space: 1837932315
Effective search space used: 1837932315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)