Os09g0359700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Target SNARE coiled-coil region domain containing protein.
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Os09g0359700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Target SNARE coiled-coil region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.4 | 0.237 | 2.97 | 0.415 | 0.0862 | -0.242 | -0.191 | 2.13 | 0.0829 | 10.2 | 27 | 1380 | -- | -- |
| 26.23 | 0.239 | 3.03 | -0.0848 | 0.0842 | -0.0843 | -0.209 | -- | 0.00027 | 10.3 | 14.4 | 1905 | -- | -- |
| 25.54 | 0.235 | 2.97 | 0.421 | 0.087 | -0.247 | -- | 2.22 | 0.0799 | 10.8 | 27.1 | 1364 | -- | -- |
| 26.39 | 0.239 | 3.03 | -0.091 | 0.0849 | -0.0848 | -- | -- | -0.000892 | 10.6 | 10.21 | 3488 | -- | -- |
| 25.98 | 0.237 | 2.97 | 0.451 | -- | -0.289 | -- | 2.5 | 0.0761 | -- | 27.58 | 1325 | -- | -- |
| 26.34 | 0.241 | 3.04 | -0.117 | 0.0893 | -- | -0.218 | -- | -0.0176 | 10 | -- | -- | -- | -- |
| 26.52 | 0.241 | 3.04 | -0.125 | 0.0903 | -- | -- | -- | -0.0177 | 10.6 | -- | -- | -- | -- |
| 26.82 | 0.241 | 3.03 | -0.0818 | -- | -0.106 | -- | -- | 0.00236 | -- | -20.65 | 3673 | -- | -- |
| 26.51 | 0.24 | 3.03 | -- | 0.0853 | -0.134 | -- | -- | 0.0225 | 10.4 | 9.135 | 6840 | -- | -- |
| 27.02 | 0.243 | 3.04 | -0.127 | -- | -- | -- | -- | -0.0181 | -- | -- | -- | -- | -- |
| 26.93 | 0.243 | 3.03 | -- | 0.0912 | -- | -- | -- | -0.00373 | 10.7 | -- | -- | -- | -- |
| 26.95 | 0.242 | 3.03 | -- | -- | -0.146 | -- | -- | 0.0238 | -- | 10.48 | 6681 | -- | -- |
| 27.44 | 0.245 | 3.04 | -- | -- | -- | -- | -- | -0.00404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.32 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 6 | 22.32 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 9 | 22.37 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 10 | 22.39 | humidity | 60.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 11 | 22.39 | humidity | 90.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 12 | 22.40 | wind | 5.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 13 | 22.40 | temperature | 30.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 14 | 22.40 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 15 | 22.40 | radiation | 30.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 17 | 22.41 | humidity | 70.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 20 | 22.42 | radiation | 40.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 21 | 22.42 | wind | 3.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 24 | 22.43 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 28 | 22.46 | wind | 1.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 29 | 22.46 | wind | 7.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 31 | 22.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 34 | 22.46 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 36 | 22.46 | radiation | 1.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 37 | 22.46 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 1 |
| 38 | 22.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 40 | 22.46 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 42 | 22.47 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 48 | 22.50 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 53 | 22.61 | wind | 9.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 54 | 22.62 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 55 | 22.65 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 68 | 23.04 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 164 | 24.39 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 165 | 24.41 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 208 | 24.72 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 212 | 24.80 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 232 | 24.84 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 15 | 23 |
| 233 | 24.84 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 256 | 24.92 | radiation | 30.0 | 30 | > th | dose independent | sin | 12 | NA |
| 283 | 25.04 | humidity | 80.0 | 720 | > th | dose independent | rect. | 22 | 9 |
| 284 | 25.06 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 287 | 25.07 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 4 |
| 293 | 25.08 | humidity | 80.0 | 720 | < th | dose independent | rect. | 22 | 9 |
| 301 | 25.11 | radiation | 30.0 | 10 | < th | dose independent | rect. | 8 | 23 |
| 303 | 25.12 | radiation | 30.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 310 | 25.16 | radiation | 30.0 | 30 | > th | dose dependent | sin | 12 | NA |
| 311 | 25.16 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 335 | 25.20 | radiation | 30.0 | 30 | < th | dose independent | sin | 12 | NA |
| 338 | 25.22 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 344 | 25.23 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 354 | 25.26 | wind | 3.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 364 | 25.27 | wind | 3.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 365 | 25.27 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 368 | 25.27 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 386 | 25.30 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 452 | 25.33 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 493 | 25.34 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 497 | 25.34 | humidity | 80.0 | 720 | > th | dose independent | rect. | 21 | 6 |
| 501 | 25.34 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 1 | NA |
| 508 | 25.34 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 532 | 25.35 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 536 | 25.35 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 538 | 25.35 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 560 | 25.35 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 606 | 25.36 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 638 | 25.37 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 650 | 25.37 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 729 | 25.38 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 731 | 25.38 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 810 | 25.38 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 811 | 25.39 | wind | 3.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 837 | 25.39 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 862 | 25.39 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 10 | 10 |
| 908 | 25.40 | wind | 3.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 929 | 25.40 | radiation | 10.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 955 | 25.40 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 10 | 10 |
| 991 | 25.41 | temperature | 25.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 994 | 25.41 | temperature | 25.0 | 14400 | < th | dose independent | sin | 4 | NA |